Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is 77456636
Identifier: 77456636
GI number: 77456636
Start: 463929
End: 464453
Strand: Direct
Name: 77456636
Synonym: Pfl01_0408
Alternate gene names: NA
Gene position: 463929-464453 (Clockwise)
Preceding gene: 77456635
Following gene: 77456637
Centisome position: 7.21
GC content: 61.14
Gene sequence:
>525_bases ATGAGCCCGATCCGTTTTATCGCCTTGTCGGCATTGTTATTGGTGCTCGGTGGCTGTGGCGGCGATGACTTCAGCGACCT CGACGCCTACATGAATGAAGTGCGCCTGCGTCCACCGGGCAAGATCGGGCCGACTCCGACCTTCCGCTCCTACCCGACGT TCACCTACAGCGCCGCCAATCTGCGCAGTCCGTTTTCGCGCCAGTTGCGGGTCGATCTGGCCGGGCAGAAACACGGTTCG CGCGACGTGAAACCCGATCCCAACCGGGTCAAGCAATACCTCGAAGGTTTCAACATCGAGCAGTTTGAAATGGTCGGCAC GATTGCCAACGCCTCCGGTTCCTTCGCCCTGCTGCGAGGCGCGGGCGGGGTTCATCGGCTCAAGGTCGGCGACTATCTGG GGCGCAACGACGGGCGCATCGTCGCCATCAGCGCTTCACAGGTCGATGTGGTGGAAATCGTTCCGGATGGCCAGGGCGCC TGGCTTGAGCGGCCGCGCACCATTCCTTTGAAAGAGCATTCATAA
Upstream 100 bases:
>100_bases ACGATTTCGAGCTGGCGCCGGCCAATCCCGAAGGCGGGCCGAAGTTGCGCATGAGCATTCTCGCCAAGACCTACCGCTAC AACGACAAGGGGCTGCAGAA
Downstream 100 bases:
>100_bases GTGGAAGTCGAACAATGAACAGGATTTTCTCCACCCTCGGTTTCTCGCTATGGATAGCGCTGCTTTCGCCGATGGTACAG GCAGCCAATCTGAAGGCGCT
Product: pilus assembly protein, PilQ
Products: NA
Alternate protein names: Pilus Assembly Protein PilQ; Type 4 Fimbrial Biogenesis Protein PilP; Type IV Pilus Biogenesis Protein PilP; Tfp Pilus Assembly Protein PilP; Fimbrial Assembly Protein; Lipoprotein; Type IV Pilus Assembly Protein PilP; Pilus Assembly Protein; Type IV Pilus Assembly Protein Pilp; Type IV Pilus Assembly; Type 4 Fimbrial Biogenesis Protein; Fimbriae Biogenesis-Related Fusion Protein; Methyl-Accepting Chemotaxis Sensory Transducer; Fimbrial Type-4 Assembly Lipoprotein; Type IV Fimbrial Biogenesis Protein PilP; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MSPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAANLRSPFSRQLRVDLAGQKHGS RDVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRGAGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGA WLERPRTIPLKEHS
Sequences:
>Translated_174_residues MSPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAANLRSPFSRQLRVDLAGQKHGS RDVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRGAGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGA WLERPRTIPLKEHS >Mature_173_residues SPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAANLRSPFSRQLRVDLAGQKHGSR DVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRGAGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGAW LERPRTIPLKEHS
Specific function: Unknown
COG id: COG3168
COG function: function code NU; Tfp pilus assembly protein PilP
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18984; Mature: 18853
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAAN CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEHHH LRSPFSRQLRVDLAGQKHGSRDVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRG HCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEC AGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGAWLERPRTIPLKEHS CCCEEEEEECHHCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SPIRFIALSALLLVLGGCGGDDFSDLDAYMNEVRLRPPGKIGPTPTFRSYPTFTYSAAN CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEHHH LRSPFSRQLRVDLAGQKHGSRDVKPDPNRVKQYLEGFNIEQFEMVGTIANASGSFALLRG HCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEC AGGVHRLKVGDYLGRNDGRIVAISASQVDVVEIVPDGQGAWLERPRTIPLKEHS CCCEEEEEECHHCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA