Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is dtd [H]
Identifier: 77456600
GI number: 77456600
Start: 424919
End: 425356
Strand: Direct
Name: dtd [H]
Synonym: Pfl01_0372
Alternate gene names: 77456600
Gene position: 424919-425356 (Clockwise)
Preceding gene: 77456599
Following gene: 77456601
Centisome position: 6.6
GC content: 59.36
Gene sequence:
>438_bases ATGAAGGGTCTGTTGCAGCGCGTGAAAGGCGCGCGGGTCGAAGTGGCGGGCGAGGTGGTTGGCAGTGTCGATCAGGGTTT GCTGGTGCTGGTGGCGGTAGAACCCGACGACACGCCGGCCAGCGCCGACAAACTTCTGCATAAGCTGCTTAACTATCGAG TGTTCAGCGACGCCGAGGGCAAGATGAATCTGTCCTTGGCGGATGTGGGCGGCGGGTTGCTGCTGGTCTCTCAGTTCACC CTCGCCGCCGACACCAAAAGCGGGTTGCGCCCGAGTTTCTCGACCGCCGCCCCTCCGGCGCTGGGCGAAAAATTATTCGA CTATCTATTAAGCAGAGCGAAACAGATGCATGGCACAGTGGCATCAGGTAGATTCGGCGCGGATATGCAGGTGCACCTGG TCAACGATGGCCCGGTAACCTTCCTGTTACAGACATGA
Upstream 100 bases:
>100_bases ATGCCGGCCACGCCGCGTCCGAACCGGGCATCACCGATGCACTGGTGCGCGCCGCCAGCAAAATGGCCCGTCGTCTGCTC GACCTGCCGCCCGAAGAAGC
Downstream 100 bases:
>100_bases AAGCGCTTGAAACATCTTTTTAAGGGCTTTTCGACTGAAAACAGGAAATTTTCGCGATAAATACTTTGTTACCCCTGATG CGTTGTCACGCGGGCTACTA
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MKGLLQRVKGARVEVAGEVVGSVDQGLLVLVAVEPDDTPASADKLLHKLLNYRVFSDAEGKMNLSLADVGGGLLLVSQFT LAADTKSGLRPSFSTAAPPALGEKLFDYLLSRAKQMHGTVASGRFGADMQVHLVNDGPVTFLLQT
Sequences:
>Translated_145_residues MKGLLQRVKGARVEVAGEVVGSVDQGLLVLVAVEPDDTPASADKLLHKLLNYRVFSDAEGKMNLSLADVGGGLLLVSQFT LAADTKSGLRPSFSTAAPPALGEKLFDYLLSRAKQMHGTVASGRFGADMQVHLVNDGPVTFLLQT >Mature_145_residues MKGLLQRVKGARVEVAGEVVGSVDQGLLVLVAVEPDDTPASADKLLHKLLNYRVFSDAEGKMNLSLADVGGGLLLVSQFT LAADTKSGLRPSFSTAAPPALGEKLFDYLLSRAKQMHGTVASGRFGADMQVHLVNDGPVTFLLQT
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family [H]
Homologues:
Organism=Homo sapiens, GI30795227, Length=148, Percent_Identity=37.8378378378378, Blast_Score=100, Evalue=6e-22, Organism=Escherichia coli, GI1790320, Length=144, Percent_Identity=56.9444444444444, Blast_Score=172, Evalue=8e-45, Organism=Caenorhabditis elegans, GI115533292, Length=143, Percent_Identity=42.6573426573427, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6319982, Length=148, Percent_Identity=37.1621621621622, Blast_Score=97, Evalue=1e-21, Organism=Drosophila melanogaster, GI281361569, Length=147, Percent_Identity=38.7755102040816, Blast_Score=100, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003732 [H]
Pfam domain/function: PF02580 Tyr_Deacylase [H]
EC number: NA
Molecular weight: Translated: 15306; Mature: 15306
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGLLQRVKGARVEVAGEVVGSVDQGLLVLVAVEPDDTPASADKLLHKLLNYRVFSDAEG CCHHHHHHCCCEEEEHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEEECCCCC KMNLSLADVGGGLLLVSQFTLAADTKSGLRPSFSTAAPPALGEKLFDYLLSRAKQMHGTV CEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC ASGRFGADMQVHLVNDGPVTFLLQT CCCCCCCCEEEEEECCCCEEEEEEC >Mature Secondary Structure MKGLLQRVKGARVEVAGEVVGSVDQGLLVLVAVEPDDTPASADKLLHKLLNYRVFSDAEG CCHHHHHHCCCEEEEHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEEECCCCC KMNLSLADVGGGLLLVSQFTLAADTKSGLRPSFSTAAPPALGEKLFDYLLSRAKQMHGTV CEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC ASGRFGADMQVHLVNDGPVTFLLQT CCCCCCCCEEEEEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA