Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is lip2 [H]
Identifier: 77456598
GI number: 77456598
Start: 422929
End: 423846
Strand: Direct
Name: lip2 [H]
Synonym: Pfl01_0370
Alternate gene names: 77456598
Gene position: 422929-423846 (Clockwise)
Preceding gene: 77456597
Following gene: 77456599
Centisome position: 6.57
GC content: 66.88
Gene sequence:
>918_bases ATGGGCACTTATCCACTCTCGCCGTCGATGGCGGCGTTCGTCGCCAGAACCGAAAGCTTCGCCAGCGATGACAGCAGCCT CGGCGGATTGCGCAAATCCTATGACGACATGTGCCGCGCCTTCACGCCCGAGCGGCCGGCGGGTCTGGAGGTGGTGGATT TCCAGTTGAGCGGGGTGGCGGTGCGCTCGTATCGCCCGCCTGTCCGGCCATCGGCCAGTGGCTGGCCGTGCGTGTTGTAT CTGCATGGCGGCGGTTGGGTGGTCGGCGGGCTGGATTCCCATGACTTCATCTGCTGCGAGCTGGCCATGGCGCTCGGGGC GATGGTGGTGGTGGTGGATTACCGGCTGGCGCCGGAGCACCCGTTCCCGGCCGGTTTCGAGGATTGCCTGAGCGTCTGGC GCGCGTTGCGCAGCGGACCGTTCTGGTTCGATCCCGGACGGATGCTGGTGGCGGGCGACAGCGCCGGCGGCAATCTGGCG GCGGCGCTGTGCCTGGCGCTACGCGATGCCGGCGAGCCGCTGCCGGGCGCGCAGGTCTTGATCTATCCGGGGCTGGGTGG CGACGCACAGTTACCGTCGCGCAGCGAATGCGCCGATGCGCCGTTGCTCGCCAGCAGCGATGTCGATTGTTATCACGCCT TGTACCTGCGCGGCACCGCGAAGCCGAACGCCTATGCGATGCCATTGCTGGCCGGGGACTTCAGCGGTTTGCCACCGGCC TGGATCGCCGTGGCGCAGTTCGATCCGCTGCGTGACGACGGCGTGTGCTATGCCGAACGGCTTGACGCAGCGGGCGTCGA CGCGGCGCTGTATTACGGCGAAGGGCTGGTTCACGGCTGCCTGCGGGCGCGACATCAGGTCGCCGAGGTCGATCGTCTCT TTGAGAACCTGCTGGGGTTCATGGCTGACAAAATGTGA
Upstream 100 bases:
>100_bases TGCGCGAGCATCCCGAAGACCTGCAACGCTGGCTGGCGGGTGTCAGCAGTTTCGATGGCAAGGACGGCGTGGCCACGGTT CAGGCCAGCCTGAAAAACTG
Downstream 100 bases:
>100_bases CAGCGCACGGGCATGCTCATTGACGTAAATCGGGTTTATGATGCCGAACGGCAGAATAATAGAAGTCCCCCCAGGGATGA CCTCGACCCCTTACGGAGCG
Product: lipolytic protein
Products: NA
Alternate protein names: Triacylglycerol lipase [H]
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MGTYPLSPSMAAFVARTESFASDDSSLGGLRKSYDDMCRAFTPERPAGLEVVDFQLSGVAVRSYRPPVRPSASGWPCVLY LHGGGWVVGGLDSHDFICCELAMALGAMVVVVDYRLAPEHPFPAGFEDCLSVWRALRSGPFWFDPGRMLVAGDSAGGNLA AALCLALRDAGEPLPGAQVLIYPGLGGDAQLPSRSECADAPLLASSDVDCYHALYLRGTAKPNAYAMPLLAGDFSGLPPA WIAVAQFDPLRDDGVCYAERLDAAGVDAALYYGEGLVHGCLRARHQVAEVDRLFENLLGFMADKM
Sequences:
>Translated_305_residues MGTYPLSPSMAAFVARTESFASDDSSLGGLRKSYDDMCRAFTPERPAGLEVVDFQLSGVAVRSYRPPVRPSASGWPCVLY LHGGGWVVGGLDSHDFICCELAMALGAMVVVVDYRLAPEHPFPAGFEDCLSVWRALRSGPFWFDPGRMLVAGDSAGGNLA AALCLALRDAGEPLPGAQVLIYPGLGGDAQLPSRSECADAPLLASSDVDCYHALYLRGTAKPNAYAMPLLAGDFSGLPPA WIAVAQFDPLRDDGVCYAERLDAAGVDAALYYGEGLVHGCLRARHQVAEVDRLFENLLGFMADKM >Mature_304_residues GTYPLSPSMAAFVARTESFASDDSSLGGLRKSYDDMCRAFTPERPAGLEVVDFQLSGVAVRSYRPPVRPSASGWPCVLYL HGGGWVVGGLDSHDFICCELAMALGAMVVVVDYRLAPEHPFPAGFEDCLSVWRALRSGPFWFDPGRMLVAGDSAGGNLAA ALCLALRDAGEPLPGAQVLIYPGLGGDAQLPSRSECADAPLLASSDVDCYHALYLRGTAKPNAYAMPLLAGDFSGLPPAW IAVAQFDPLRDDGVCYAERLDAAGVDAALYYGEGLVHGCLRARHQVAEVDRLFENLLGFMADKM
Specific function: Has An Esterase Activity. Triacetyl Glycerol (Triacetin) Is A Substrate Of The Enzyme. [C]
COG id: COG0657
COG function: function code I; Esterase/lipase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 'GDXG' lipolytic enzyme family [H]
Homologues:
Organism=Homo sapiens, GI206597554, Length=297, Percent_Identity=30.3030303030303, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI68299767, Length=335, Percent_Identity=28.955223880597, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI68051721, Length=182, Percent_Identity=33.5164835164835, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI157041239, Length=165, Percent_Identity=37.5757575757576, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI226423947, Length=190, Percent_Identity=32.1052631578947, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI61966717, Length=166, Percent_Identity=34.3373493975904, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI157041237, Length=125, Percent_Identity=38.4, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1786682, Length=262, Percent_Identity=28.6259541984733, Blast_Score=85, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17567059, Length=287, Percent_Identity=28.9198606271777, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI72001146, Length=330, Percent_Identity=26.0606060606061, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI71996133, Length=187, Percent_Identity=30.4812834224599, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17540028, Length=178, Percent_Identity=31.4606741573034, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24656084, Length=145, Percent_Identity=33.1034482758621, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24656076, Length=145, Percent_Identity=33.1034482758621, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI20130169, Length=145, Percent_Identity=33.1034482758621, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013094 - InterPro: IPR002168 [H]
Pfam domain/function: PF07859 Abhydrolase_3 [H]
EC number: =3.1.1.3 [H]
Molecular weight: Translated: 32499; Mature: 32368
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS01174 LIPASE_GDXG_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTYPLSPSMAAFVARTESFASDDSSLGGLRKSYDDMCRAFTPERPAGLEVVDFQLSGVA CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEE VRSYRPPVRPSASGWPCVLYLHGGGWVVGGLDSHDFICCELAMALGAMVVVVDYRLAPEH EECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHEEEEEEEEECCCC PFPAGFEDCLSVWRALRSGPFWFDPGRMLVAGDSAGGNLAAALCLALRDAGEPLPGAQVL CCCCCHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEE IYPGLGGDAQLPSRSECADAPLLASSDVDCYHALYLRGTAKPNAYAMPLLAGDFSGLPPA EECCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHH WIAVAQFDPLRDDGVCYAERLDAAGVDAALYYGEGLVHGCLRARHQVAEVDRLFENLLGF HEEEEECCCCCCCCCHHHHHHCCCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH MADKM HHCCC >Mature Secondary Structure GTYPLSPSMAAFVARTESFASDDSSLGGLRKSYDDMCRAFTPERPAGLEVVDFQLSGVA CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEE VRSYRPPVRPSASGWPCVLYLHGGGWVVGGLDSHDFICCELAMALGAMVVVVDYRLAPEH EECCCCCCCCCCCCCEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHEEEEEEEEECCCC PFPAGFEDCLSVWRALRSGPFWFDPGRMLVAGDSAGGNLAAALCLALRDAGEPLPGAQVL CCCCCHHHHHHHHHHHHCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEE IYPGLGGDAQLPSRSECADAPLLASSDVDCYHALYLRGTAKPNAYAMPLLAGDFSGLPPA EECCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHH WIAVAQFDPLRDDGVCYAERLDAAGVDAALYYGEGLVHGCLRARHQVAEVDRLFENLLGF HEEEEECCCCCCCCCHHHHHHCCCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH MADKM HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1907455 [H]