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The map label for this gene is fecI [H]

Identifier: 76817390

GI number: 76817390

Start: 39482

End: 39991

Strand: Direct

Name: fecI [H]

Synonym: BURPS1710b_A0018

Alternate gene names: 76817390

Gene position: 39482-39991 (Clockwise)

Preceding gene: 76819359

Following gene: 76817882

Centisome position: 1.24

GC content: 70.59

Gene sequence:

>510_bases
ATGCCGGCCAACACTTTGCGTCTGCAGCGGGAGATCGCTGCGCTCTATACCGGTCATCGCGGCTGGCTGCACGGCTGGCT
GTCGAAGAAGCTCGGCTGCGGCGAGCGCGCGGCCGATCTGGTTCACGACACGTTCATCCGCCTGCTCGCACGCGACGAGC
CGATCGACGCGGCCGAGCCGCGCGCGTTCCTGACGACCGTCGCGCAGCGCGTGCTGTACAACCACTGGCGGCGCGAGCGG
CTCGAGCGCGCGTATCTCGACGCGCTCGCGCAATGGCCGGAGGCGGTCGCGCCGTCGCCGGAGACACGCGCCGTCCTGTT
CGAGACGCTCGTCGAGGTCGACCGGATGCTCGACGGGCTGCCCGCCGTCGTTCGCCGCGCGTTCCTGCTCGCGCAGCTCG
ACGGCATGACGCACGCGCAGATCGCGGCCGAGCTGCGCGTGTCGCTCGCGACCGTCAAGCGCTACCTGGTGAAAGCGGGC
GCGCAGTGCTACTTCGCGATCGCCGCATGA

Upstream 100 bases:

>100_bases
CGTGCGGACGCATTCACCGTCCGGTTACAAATATGTATATAATAATCATTCTCATTTACAAAATAGCATCCCGGCGTGAC
GGTCCGGGGGGATCACGTCC

Downstream 100 bases:

>100_bases
GCGGCGCAAAGCCGGCGGGCGGCCCGCCCGCGGTGCCCGAGCGCGTCGCGCGGCGTGCGGTCCAATGGTGGGTCGAGCTC
GGCGCCGCGCCCGCGAGCGA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRER
LERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAG
AQCYFAIAA

Sequences:

>Translated_169_residues
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRER
LERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAG
AQCYFAIAA
>Mature_168_residues
PANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEPRAFLTTVAQRVLYNHWRRERL
ERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGLPAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGA
QCYFAIAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=150, Percent_Identity=47.3333333333333, Blast_Score=147, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19031; Mature: 18900

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEP
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH
PAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECC
>Mature Secondary Structure 
PANTLRLQREIAALYTGHRGWLHGWLSKKLGCGERAADLVHDTFIRLLARDEPIDAAEP
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQRVLYNHWRRERLERAYLDALAQWPEAVAPSPETRAVLFETLVEVDRMLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCH
PAVVRRAFLLAQLDGMTHAQIAAELRVSLATVKRYLVKAGAQCYFAIAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]