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The map label for this gene is yafC [H]

Identifier: 76817385

GI number: 76817385

Start: 27530

End: 28825

Strand: Direct

Name: yafC [H]

Synonym: BURPS1710b_A0008

Alternate gene names: 76817385

Gene position: 27530-28825 (Clockwise)

Preceding gene: 76818207

Following gene: 76818722

Centisome position: 0.87

GC content: 67.67

Gene sequence:

>1296_bases
GTGGAAGGGTGCGCCGATCGGTCGCGCGACGAGCCGGAAATTATATGTCATTGTGATATAAATTGCCGACCCCGCCGATT
GCGCGGTCGGCCGTTGGCGTTTCAGGATGCGGAAAATGTGCGCGCGCGAGCGCGCCGGCGCGCATCGGCGTACAATTCGC
CCGATCTGATCTCGACGAATCACATAATTTGCCGCCCGCGATGCCCGCTCCCAGCCTGTCCCATGGCCCGCGCATCCGGT
CGATCAGTCGTCCCCGGCCGCGCATCGCGGCGCTCGCCGCTTCCCGCCGGCCGTTGTTCCCCATTCATTCCCGAAGCCCA
TCCCATGGACATGCTCGATAACATGCGCCTGTTCGTGCGCGTCGTCGAAGCCGGCAGTTTCACCGCGGTCGCGAAGGAAA
TCGACGCGACCACGGCCCAGGTGTCGCGCGCCGTTTCGAATCTCGAAGCGCACGTGCAGACGCGCCTCCTGCACCGCACG
ACCCGTCACCTCGGGTTGACCGAGAGCGGCCAGCGCTACTTCGAGCGCGCGAAGTCGATCCTCGCGGAGATCGACTATGC
GAACGCCGAGGCGCGCAACGCGCTGCTGCGGCCGAGCGGCAAGCTGCGCATCCATGCGATGACGGGGCTCGGGCAGAGCC
ACGTGGTGTCGTCGATCGTCCGCTATCAGGAAGACAATCCGGACGTGTCGGTCGAGCTCACGCTCGCGCAGCGCATGCCG
AATCTCGTCGAGGAGGGCTACGACGTGTCGATCGTGTCGGCGTCGCATCTGCCCGATTCGGGCTATGTCGCGCAGACCTG
CGGGACGAGCTGCAGCGTGCTCGTCGCGTCGCGCGAGTATCTCGCCCGGCACGGCACGCCGACCACGCCCGACGATCTCG
CGAAGCACGTGTGCCTGCGGCTCGACACGCCGGCCTCGCCGGGCGGCGAGTGGCGGCTCGAGCGCGACGACGGCGACGAG
ACCGTCTACGCGCTGCCGCCCGCGCCGTTCCAGGCGAACGTGCCGGATGCGTTGTCGGTGGCGGTGCGCGCGGGCCGCGG
GATCGGCTCGATCGCGCTGTACACGGCGCTCGACGACATCCGCGAAGGGCGGCTCGTGCGCGTGCTGCCGAACTACCGGC
TCGATACGCTGAGCGTGTACGCGGTCTATGCGACGCGCCGCTATCTCGACGCGAAGATCCGCACGTTTCTCGACCATCTG
CGCACGACGCTCGCGCCCGCGCTCGAAAACGATCTGAAGGAGCTCAACCGGCTGAACGGCGGCGTGGGGAAGAAGGCGCT
GCGCGAGGTCGCGTAG

Upstream 100 bases:

>100_bases
CGGGACGAAGCGCCAAAGCCAGCGCACGAGGCCGCGGGCAAGGCGATGAGCGAACGCGAGGGACGAGGACAAGGTCGGAC
TGCCGTAACGTAAATGGAAG

Downstream 100 bases:

>100_bases
CGGCGGCGGGCGCGACGCCGCGGATGGCGTGGCGTCGCGTGTCGCGTGTCGGTTCGCGCGCCGCAGGGCGGGCGTGACGC
GTCGCGCGATACGACGCGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MEGCADRSRDEPEIICHCDINCRPRRLRGRPLAFQDAENVRARARRRASAYNSPDLISTNHIICRPRCPLPACPMARASG
RSVVPGRASRRSPLPAGRCSPFIPEAHPMDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRT
TRHLGLTESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMP
NLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDE
TVYALPPAPFQANVPDALSVAVRAGRGIGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL
RTTLAPALENDLKELNRLNGGVGKKALREVA

Sequences:

>Translated_431_residues
MEGCADRSRDEPEIICHCDINCRPRRLRGRPLAFQDAENVRARARRRASAYNSPDLISTNHIICRPRCPLPACPMARASG
RSVVPGRASRRSPLPAGRCSPFIPEAHPMDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRT
TRHLGLTESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMP
NLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDE
TVYALPPAPFQANVPDALSVAVRAGRGIGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL
RTTLAPALENDLKELNRLNGGVGKKALREVA
>Mature_431_residues
MEGCADRSRDEPEIICHCDINCRPRRLRGRPLAFQDAENVRARARRRASAYNSPDLISTNHIICRPRCPLPACPMARASG
RSVVPGRASRRSPLPAGRCSPFIPEAHPMDMLDNMRLFVRVVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRT
TRHLGLTESGQRYFERAKSILAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMP
NLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDDLAKHVCLRLDTPASPGGEWRLERDDGDE
TVYALPPAPFQANVPDALSVAVRAGRGIGSIALYTALDDIREGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHL
RTTLAPALENDLKELNRLNGGVGKKALREVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=35.7388316151203, Blast_Score=159, Evalue=3e-40,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=31.1643835616438, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=30, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=30.8970099667774, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.2682926829268, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=29.1525423728814, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=26.2068965517241, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788481, Length=299, Percent_Identity=24.4147157190635, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 47487; Mature: 47487

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGCADRSRDEPEIICHCDINCRPRRLRGRPLAFQDAENVRARARRRASAYNSPDLISTN
CCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECC
HIICRPRCPLPACPMARASGRSVVPGRASRRSPLPAGRCSPFIPEAHPMDMLDNMRLFVR
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMP
HHHHCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHCH
NLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDDLAKHVCLR
HHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHEE
LDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGIGSIALYTALDDI
ECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
REGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNG
HCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVGKKALREVA
CCCHHHHHHCC
>Mature Secondary Structure
MEGCADRSRDEPEIICHCDINCRPRRLRGRPLAFQDAENVRARARRRASAYNSPDLISTN
CCCCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECC
HIICRPRCPLPACPMARASGRSVVPGRASRRSPLPAGRCSPFIPEAHPMDMLDNMRLFVR
CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
VVEAGSFTAVAKEIDATTAQVSRAVSNLEAHVQTRLLHRTTRHLGLTESGQRYFERAKSI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LAEIDYANAEARNALLRPSGKLRIHAMTGLGQSHVVSSIVRYQEDNPDVSVELTLAQRMP
HHHHCCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHCH
NLVEEGYDVSIVSASHLPDSGYVAQTCGTSCSVLVASREYLARHGTPTTPDDLAKHVCLR
HHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEEEHHHHHHHHCCCCCCHHHHHHHHHEE
LDTPASPGGEWRLERDDGDETVYALPPAPFQANVPDALSVAVRAGRGIGSIALYTALDDI
ECCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
REGRLVRVLPNYRLDTLSVYAVYATRRYLDAKIRTFLDHLRTTLAPALENDLKELNRLNG
HCCCEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GVGKKALREVA
CCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]