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The map label for this gene is rbfA [H]

Identifier: 75674224

GI number: 75674224

Start: 27584

End: 28024

Strand: Direct

Name: rbfA [H]

Synonym: Nwi_0025

Alternate gene names: 75674224

Gene position: 27584-28024 (Clockwise)

Preceding gene: 75674223

Following gene: 75674225

Centisome position: 0.81

GC content: 60.09

Gene sequence:

>441_bases
ATGACGAGTGTTTTTCGAAGGACGTTCATGCCGCGTCGTCACCAGCCAGAGAAACATCCCGGCGGCTCGCACCGCCAGCT
GCGCGTCGCGGAAACCGTGCGTCACGCGATCGCGGATATCCTGGCGCAGGGTCAGGTTCATGATCCCGTTCTTGAAGGAC
ACCTCGTCACCGTGCCCGAAGTCCGCATGTCGGCCGACCTCAAGCTCGCGACAATCTACGTGATGCCGCTCGGCGGCCGC
GACACCGCTGACGTGATCGATGCGCTGGATCGCAACAGAAAATTCCTGCGCGGCGAAATCGCGCGGCGCGTTAACCTGAA
ATTTGCACCTGACATCCGCTTCCGCGTCGACGAGCGATTCGACGAAGCGGAACGTATCGAGAAGTTATTGAGAACGCCTG
CGGTACAGAGAGATCTCGCACCGGATACCGACGAAAGCTGA

Upstream 100 bases:

>100_bases
AACTCGAATGCGACGTCATGCCCGGCTTTGTCCGGGCATGCGCGTCTTGAGAAACTCTACAGGAAGAACAAACACGTCGA
TGGCCGGGACAAGCCCGGCC

Downstream 100 bases:

>100_bases
CCGATCATGACCACGCCTGACGCCGCCATCGACTCCAAAATCAGCGATTCGAACGGCGCCGACAAAAATAAATCCGCGGC
CGACGATAACGCCTTCAACG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTSVFRRTFMPRRHQPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYVMPLGGR
DTADVIDALDRNRKFLRGEIARRVNLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRDLAPDTDES

Sequences:

>Translated_146_residues
MTSVFRRTFMPRRHQPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYVMPLGGR
DTADVIDALDRNRKFLRGEIARRVNLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRDLAPDTDES
>Mature_145_residues
TSVFRRTFMPRRHQPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPEVRMSADLKLATIYVMPLGGRD
TADVIDALDRNRKFLRGEIARRVNLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRDLAPDTDES

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 16739; Mature: 16608

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSVFRRTFMPRRHQPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPE
CCHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCC
VRMSADLKLATIYVMPLGGRDTADVIDALDRNRKFLRGEIARRVNLKFAPDIRFRVDERF
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEECCCCEEECHHCC
DEAERIEKLLRTPAVQRDLAPDTDES
CHHHHHHHHHHCCCHHHCCCCCCCCC
>Mature Secondary Structure 
TSVFRRTFMPRRHQPEKHPGGSHRQLRVAETVRHAIADILAQGQVHDPVLEGHLVTVPE
CHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHCCEEEECCC
VRMSADLKLATIYVMPLGGRDTADVIDALDRNRKFLRGEIARRVNLKFAPDIRFRVDERF
CCCCCCEEEEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHCCEECCCCEEECHHCC
DEAERIEKLLRTPAVQRDLAPDTDES
CHHHHHHHHHHCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA