| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is gyrB [H]
Identifier: 75674203
GI number: 75674203
Start: 4812
End: 7253
Strand: Direct
Name: gyrB [H]
Synonym: Nwi_0004
Alternate gene names: 75674203
Gene position: 4812-7253 (Clockwise)
Preceding gene: 75674202
Following gene: 75674207
Centisome position: 0.14
GC content: 64.62
Gene sequence:
>2442_bases ATGAACGAACCTGCCCGGCAGCAAATTGCCGATACCGAATCTGTCGCGGCCATCGAATATGGCGCGGAATCGATCAGGGT GCTCAAGGGCCTCGACGCCGTGCGCAAGCGGCCCGGCATGTATATCGGCGACACCGATGACGGCTCCGGCCTGCACCACA TGGTTTATGAAGTGGTCGACAACGCCATCGACGAGGCGCTGGCGGGACACGCCACCGCCGTCGAGGTCATTCTCAACGCT GACAATTCAGTCACGGTGCGCGACGACGGCCGCGGCATTCCCGTCGACATCCACAAGGGCGAAGGCGTCTCGGCGGCTGA AGTCATCATGACGCAGCTGCACGCCGGCGGAAAGTTCGATCAGAACTCCTACAAGGTCTCCGGCGGACTGCACGGCGTCG GCGTCTCCGTCGTCAACGCGCTCTCCAGCAAGCTGACCCTGCGCATCTGGCGCAGGGACAAGGAACACCTGATCGAATTC GCCAACGGCGACGCGCTGGCGCCGTTGAAGGTCGTCGGCGACGCCAACGGCAGGCGCGGCACCGAAGTCACTTTTCTCGC CTCGACCGAGACCTTCACCAACATCGAGTATGATTTCGCCACGCTGGAGCATCGGCTGCGCGAACTCGCGTTCCTGAACT CCGGGGTCAACATCCTGCTCTCGGACATGCGCCACGCCGTCGAGCGGCGCGAGCAGATGATGTACGAAGGCGGCGTGGTC GAATTCGTCAAGTATCTCGACCGCAACAAGAAGGCGATGGTGGCGGATCCGATCATGGTCCGCGCCGAGATGAACGGCAT CAGCGTCGAGGCCGCGCTGTGGTGGAACGACAGCTACCACGAGAACGTCCTGTGCTTCACCAACAACATTCCGCAGCGCG ACGGCGGCACCCATCTCGCCGGCTTTCGCGGCGCCCTGACCCGGCAGGTCAACGGCTATGCCGATGCCATGGCCAAGAAG GAGAGGATCGCGCTGACCGGCGACGACTGCCGCGAGGGATTGACCGCGGTGCTTTCGGTGAAAGTGCCGGATCCGAAATT CTCGTCGCAGACCAAGGACAAGCTGGTGTCGTCGGAAGTGCGTCCCGTGGTCGAGAACGTCATCAACGAGGCGCTCGCCG CCTGGTTCGAGGAGCATCCGACCGAGGCGAAGCTCATCGTCGGCAAGGTGGTCGAGGCCGCGGCGGCGCGCGAGGCCGCG CGGAAGGCCCGCGAACTGACACGGCGCAAGGGCGCGCTCGATGTCGCCTCGCTCCCCGGCAAGCTCGCCGACTGCCAGGA ACGCGATCCGGCGAAATCGGAACTGTTCATCGTCGAGGGAGATTCGGCCGGCGGAAGCGCCAAGCAGGGCCGCAACCGTG AATTCCAGGCCGTCCTGCCGCTCCGCGGCAAGATCCTGAACGTCGAGCGCGCGCGCTTCGACAAAATGCTGTCGTCCGAG CAGATCGGCACGCTGATCACCGCGCTCGGCACCGGAATCGGCCGCGAGGATTTCGACCTCTCGAAGCTACGCTATCACAA GATCATCGTGATGACCGACGCCGACGTCGACGGCGCGCATATCCGCACGCTGCTCCTGACCTTCTTCTTCCGCCAGATGC CGGCGCTGATCGAGGCCGGCCATCTCTATATCGCGCAGCCGCCGCTCTACAAGGTGACCCGCGGCAAGTCCGAACGATAC CTGAAGGACGAGCGCGCGCTGGAAGACTACCTGATCGAAACCGGGCTCGACGACTGCGTGTACAAGCTCGCCACGGGCGA AGACCGCGGCGGCCGCGACCTGCTGGCGCTGGTGGATGACGCCCGCGTGATCCGGAACGTGCTGCAGAATCTGCATGGCC GCTACAACCGCGGCGTGATCGAGCAGGCGGCGATCGCCGGCGTGATGAATCCGAGGATCACCGAAAATCTGGCGACGGCA ACCGCCGCCGCCGATTACATCGCCAGGCGACTGGATGCGCTGGCCGACGAGGTCGAGCGCGGCTGGGTCGGCCGCTTTGT CGAGGGTCAGGGCTTTTTCTTCGAGCGCACCGTGCGCGGCGTCAAGGACGTCGCCATGATCGACGACGCGCTGCTCGGCT CGGCCGATGCGCGCAAGCTCGATGAATACGCTGGCAGGCTGCAGGAAGCCTATCCGCGCCCCGGCCTCCTGCGGCGCAGG GATACCGAAACCGCGATCCATGGTCCGGTCAGTCTGTTCGAGGCGGTGACCGACGCCGGGCGCAAAGGCGTCGCGCTGCA ACGCTACAAAGGCCTCGGCGAGATGAACCCGGACCAGCTCTGGGAGACCACGCTCGACGTCAGCGAGCGTTCGCTGCTGC AAGTGAAGATCAAGGAGGTCGACGAGGCCGATGACATCTTCACCAAGCTGATGGGCGATGTGGTCGAACCGCGCCGCGAG TTCATCCAGGACAACTCGCTCAGCGCCAATGTGGACGTGTGA
Upstream 100 bases:
>100_bases GGCACAACTTTGCGCTAGTCGCGGTGCCGCTTTCGTGCCAGAAATAGACTTCTCAGCCGCATCGACCGCGTCTGTCCCGG GACACCTCTGAAGGCCTTTC
Downstream 100 bases:
>100_bases GCCGGCGACGCCTCACCTTCCCTCAAAAAAGCGGTAGCGCTCGCGACAGCTATCGGATGACGCCGGAGGTGAAGCCGGGT CTGCGATGCGGCGGCTTGAT
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MNEPARQQIADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVILNA DNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLTLRIWRRDKEHLIEF ANGDALAPLKVVGDANGRRGTEVTFLASTETFTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVV EFVKYLDRNKKAMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADAMAKK ERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAA RKARELTRRKGALDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE QIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPLYKVTRGKSERY LKDERALEDYLIETGLDDCVYKLATGEDRGGRDLLALVDDARVIRNVLQNLHGRYNRGVIEQAAIAGVMNPRITENLATA TAAADYIARRLDALADEVERGWVGRFVEGQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRR DTETAIHGPVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEVDEADDIFTKLMGDVVEPRRE FIQDNSLSANVDV
Sequences:
>Translated_813_residues MNEPARQQIADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVILNA DNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLTLRIWRRDKEHLIEF ANGDALAPLKVVGDANGRRGTEVTFLASTETFTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVV EFVKYLDRNKKAMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADAMAKK ERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAA RKARELTRRKGALDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE QIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPLYKVTRGKSERY LKDERALEDYLIETGLDDCVYKLATGEDRGGRDLLALVDDARVIRNVLQNLHGRYNRGVIEQAAIAGVMNPRITENLATA TAAADYIARRLDALADEVERGWVGRFVEGQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRR DTETAIHGPVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEVDEADDIFTKLMGDVVEPRRE FIQDNSLSANVDV >Mature_813_residues MNEPARQQIADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATAVEVILNA DNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSSKLTLRIWRRDKEHLIEF ANGDALAPLKVVGDANGRRGTEVTFLASTETFTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVV EFVKYLDRNKKAMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLAGFRGALTRQVNGYADAMAKK ERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAA RKARELTRRKGALDVASLPGKLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE QIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAGHLYIAQPPLYKVTRGKSERY LKDERALEDYLIETGLDDCVYKLATGEDRGGRDLLALVDDARVIRNVLQNLHGRYNRGVIEQAAIAGVMNPRITENLATA TAAADYIARRLDALADEVERGWVGRFVEGQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRR DTETAIHGPVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEVDEADDIFTKLMGDVVEPRRE FIQDNSLSANVDV
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the type II topoisomerase family [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=548, Percent_Identity=25.1824817518248, Blast_Score=134, Evalue=3e-31, Organism=Homo sapiens, GI19913408, Length=549, Percent_Identity=24.408014571949, Blast_Score=132, Evalue=2e-30, Organism=Escherichia coli, GI48994957, Length=811, Percent_Identity=55.363748458693, Blast_Score=845, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=557, Percent_Identity=40.394973070018, Blast_Score=390, Evalue=1e-109, Organism=Caenorhabditis elegans, GI17535065, Length=546, Percent_Identity=24.1758241758242, Blast_Score=132, Evalue=6e-31, Organism=Caenorhabditis elegans, GI212645845, Length=518, Percent_Identity=22.7799227799228, Blast_Score=109, Evalue=7e-24, Organism=Caenorhabditis elegans, GI212645657, Length=142, Percent_Identity=33.0985915492958, Blast_Score=72, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=601, Percent_Identity=24.9584026622296, Blast_Score=127, Evalue=6e-30, Organism=Drosophila melanogaster, GI17136538, Length=640, Percent_Identity=23.90625, Blast_Score=144, Evalue=2e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 89699; Mature: 89699
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEPARQQIADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD CCCCHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH NAIDEALAGHATAVEVILNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFD HHHHHHHCCCCEEEEEEEECCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHCCCCCC QNSYKVSGGLHGVGVSVVNALSSKLTLRIWRRDKEHLIEFANGDALAPLKVVGDANGRRG CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCC TEVTFLASTETFTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVV CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH EFVKYLDRNKKAMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA HHHHHHCCCCCEEEECCEEEEEECCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCH GFRGALTRQVNGYADAMAKKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV HHHHHHHHHHHHHHHHHHHHCCEEECCHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH RPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC KLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEECHHHHHHHHHHHHH QIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAG HHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC HLYIAQPPLYKVTRGKSERYLKDERALEDYLIETGLDDCVYKLATGEDRGGRDLLALVDD CEEEECCCCEEHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHH ARVIRNVLQNLHGRYNRGVIEQAAIAGVMNPRITENLATATAAADYIARRLDALADEVER HHHHHHHHHHHCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GWVGRFVEGQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRR CHHCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC DTETAIHGPVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEV CCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCHHHHHEEHHHHC DEADDIFTKLMGDVVEPRREFIQDNSLSANVDV CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MNEPARQQIADTESVAAIEYGAESIRVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVD CCCCHHHHHHCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHH NAIDEALAGHATAVEVILNADNSVTVRDDGRGIPVDIHKGEGVSAAEVIMTQLHAGGKFD HHHHHHHCCCCEEEEEEEECCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHCCCCCC QNSYKVSGGLHGVGVSVVNALSSKLTLRIWRRDKEHLIEFANGDALAPLKVVGDANGRRG CCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCCCC TEVTFLASTETFTNIEYDFATLEHRLRELAFLNSGVNILLSDMRHAVERREQMMYEGGVV CEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH EFVKYLDRNKKAMVADPIMVRAEMNGISVEAALWWNDSYHENVLCFTNNIPQRDGGTHLA HHHHHHCCCCCEEEECCEEEEEECCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCH GFRGALTRQVNGYADAMAKKERIALTGDDCREGLTAVLSVKVPDPKFSSQTKDKLVSSEV HHHHHHHHHHHHHHHHHHHHCCEEECCHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH RPVVENVINEALAAWFEEHPTEAKLIVGKVVEAAAAREAARKARELTRRKGALDVASLPG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC KLADCQERDPAKSELFIVEGDSAGGSAKQGRNREFQAVLPLRGKILNVERARFDKMLSSE CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEECHHHHHHHHHHHHH QIGTLITALGTGIGREDFDLSKLRYHKIIVMTDADVDGAHIRTLLLTFFFRQMPALIEAG HHHHHHHHHHCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC HLYIAQPPLYKVTRGKSERYLKDERALEDYLIETGLDDCVYKLATGEDRGGRDLLALVDD CEEEECCCCEEHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHH ARVIRNVLQNLHGRYNRGVIEQAAIAGVMNPRITENLATATAAADYIARRLDALADEVER HHHHHHHHHHHCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GWVGRFVEGQGFFFERTVRGVKDVAMIDDALLGSADARKLDEYAGRLQEAYPRPGLLRRR CHHCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC DTETAIHGPVSLFEAVTDAGRKGVALQRYKGLGEMNPDQLWETTLDVSERSLLQVKIKEV CCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCHHHHHEEHHHHC DEADDIFTKLMGDVVEPRREFIQDNSLSANVDV CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226640 [H]