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The map label for this gene is virS [H]

Identifier: 73538979

GI number: 73538979

Start: 1894355

End: 1895374

Strand: Reverse

Name: virS [H]

Synonym: Reut_B5154

Alternate gene names: 73538979

Gene position: 1895374-1894355 (Counterclockwise)

Preceding gene: 73538987

Following gene: 73538974

Centisome position: 69.53

GC content: 63.24

Gene sequence:

>1020_bases
ATGGATGCCCTGGTGAGAGCAAGTGGATTGCGTGGCTACCCCGCGCTGATGCGCGACCTGGGTTGCGACCCCACGCCGTT
GCTGCAGCGATATCACCTCGACGAGGGGGCGCTCGGCAGCGATGACGCCATGATTTCGCTACGCGCCGTCGTGCATCTTC
TGGAAGCCAGCGCGGAACAGACCCGGACCGGTGACCTCGGCTTGCGCCTGTCCCGGCACCAAAGCATTGACGTGCTGGGG
CCTTTGAGCATCGCTTTGCAGAACGCACCGACGATTCGCGCGGCCATGGATTTCGCGGCGCGCCACACGTTCGTGCATAG
CCCCGGCCTGGTCTACGCCGTGCACAAGCACAGCGAGTTTGCCAACGATGCAGCCGAAGTTTCCATCGAGATCCGCCTCT
CGCGGCAGCCGGCTCAGCGGCAAACCATTGACCTGTGCCTGGCAGATATCCATAACTTCACTCGGCTGCTAGCCGGCGAC
CGATACCTGCTTCGCGCAGTGTCAGTTCCACACACGCCCGTTGTACCCGTCAGCACTTACGAGCGCTTCTTTGGCGCCAG
GGTATGGGTGGAGCAGCCGAGAGCCAGTCTGCATCTCAGCCGGAGCACGCTTGCGGCCGACCTGCTCGGCGTCGACGCAA
CGCTGCGGCGAATTGCCGAGGACTACATCTTTCGCCATTTCGGCAGCGAGCAAGGCAGTGTTTCTGATCGTGTCCGGCAG
GTTCTGCGCCAGACGCTGGGCACGTCGAGCCACAGCAAGGCCACCGTGGCCGATCTGCTGGCCTTGCACCCGCGCACGAT
GCAACGCCGCCTTGCTGCGGAGGCGACCAGTTTCGAAGCCATCAGGGACGACGTGCGCAGGGAACTGGCCATGCGCTATC
TATGCGAGACCAGTCTGCCTCTCGGACAGATCTCTCTCTTGCTGGGCCTTCCCGCCCAATCTGCGTTGTCGCGGGCTTGC
CGTCAGTGGTATGGCGTCCCCCCTTCTGCATTGCGCAAGCATAAACGCGCCGCAGATTGA

Upstream 100 bases:

>100_bases
CGCAGCGTCTCCTTATGTCTTGCCTGATCGCCCGGAAACTGTAGCGCGCCGCGCGAAAGCACTCTTGACACTACGAGACA
CTTAATTTACGTTACGAGCC

Downstream 100 bases:

>100_bases
TCCACGCGCTGCGAGGCCGCAACCGGCCGGAAACGGCCGGCTCACATCTAGGCCGGCCTTGTATAGAGGCAAAGCCCCGG
GAAGTTTTCAGGGGAGGCCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MDALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQTRTGDLGLRLSRHQSIDVLG
PLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEFANDAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGD
RYLLRAVSVPHTPVVPVSTYERFFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQ
VLRQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLPLGQISLLLGLPAQSALSRAC
RQWYGVPPSALRKHKRAAD

Sequences:

>Translated_339_residues
MDALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQTRTGDLGLRLSRHQSIDVLG
PLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEFANDAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGD
RYLLRAVSVPHTPVVPVSTYERFFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQ
VLRQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLPLGQISLLLGLPAQSALSRAC
RQWYGVPPSALRKHKRAAD
>Mature_339_residues
MDALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQTRTGDLGLRLSRHQSIDVLG
PLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEFANDAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGD
RYLLRAVSVPHTPVVPVSTYERFFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQ
VLRQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLPLGQISLLLGLPAQSALSRAC
RQWYGVPPSALRKHKRAAD

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37501; Mature: 37501

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQ
CCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTGDLGLRLSRHQSIDVLGPLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEF
CCCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHEECCCCEEEEEECCHHH
ANDAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGDRYLLRAVSVPHTPVVPVSTY
CCCHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHH
ERFFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQ
HHHHCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VLRQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLP
HHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LGQISLLLGLPAQSALSRACRQWYGVPPSALRKHKRAAD
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDALVRASGLRGYPALMRDLGCDPTPLLQRYHLDEGALGSDDAMISLRAVVHLLEASAEQ
CCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TRTGDLGLRLSRHQSIDVLGPLSIALQNAPTIRAAMDFAARHTFVHSPGLVYAVHKHSEF
CCCCCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHEECCCCEEEEEECCHHH
ANDAAEVSIEIRLSRQPAQRQTIDLCLADIHNFTRLLAGDRYLLRAVSVPHTPVVPVSTY
CCCHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHH
ERFFGARVWVEQPRASLHLSRSTLAADLLGVDATLRRIAEDYIFRHFGSEQGSVSDRVRQ
HHHHCCHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
VLRQTLGTSSHSKATVADLLALHPRTMQRRLAAEATSFEAIRDDVRRELAMRYLCETSLP
HHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LGQISLLLGLPAQSALSRACRQWYGVPPSALRKHKRAAD
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]