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The map label for this gene is yncD [H]

Identifier: 73538691

GI number: 73538691

Start: 1579101

End: 1581296

Strand: Reverse

Name: yncD [H]

Synonym: Reut_B4866

Alternate gene names: 73538691

Gene position: 1581296-1579101 (Counterclockwise)

Preceding gene: 73538693

Following gene: 73538690

Centisome position: 58.0

GC content: 67.35

Gene sequence:

>2196_bases
ATGGATTCCACGACCGCGCCAGCTTCCAACCGCTCCACACCGATGACGACAGGCGGCAGGCAGGTACTGGCAATCCGGCG
TATCGTTACCCGCCATTCGGCGGCATCAGTGTTCAGCCTGCTGGCCAGCCTGGCCGCAGCGGGCCAGTCAGCGGCCGCCG
AGCCGGATGTGGCGCTGCCCGATGTCGTCGTCAGCGCGTCGCGCAGCGAACAACGGCGTTTCGATGCTCCTGCAGCCGTG
GACAGTGTTCCTGTCGATGCGCTGCGCGCCACATCGCCGCTCGTGAACCTTTCCGAGGTGCTGACCGGTGTGCCCGGTGT
GGCCGTGCGCGACCGTCAGAACTATTCGCAAGACCTGCAGCTTTCCGTGCGCGGCTTCGGCACGCGCTCGACGTTCGGCG
TGCGCGGCGTGCGCCTGTATGTGGATGGAATTCCCGCCACCATGCCTGACGGGCAGGGACAGACCTCGACCGCCGATCTG
GCCAATGCGAGCCGCGTAGAGGTCCTGCGTGGCCCATTCGCACAGATGTACGGCAATGCGTCGGGCGGCGTAGTTCAGGT
GTTCACGCCGGACCCGCCCAAGGATGGCTTCACCGGCCGTGCCTCGACCGGGGTTGGTTCCGATGGCCAGTGGCAGGCGG
GCGTGTCGCTCGGCGGTGGCAACGACAAGCTCGGCGGCACGCTGGATGCGTGGACGTACCAGACCGACGGCTACCGCGAT
CACAGCGCCGCGCGCCGCTACCAGCTCAATGCCAAGGTCGTGGCCCAGCCCACCGATGCCACGCGCGTGACGGGCCAGTT
CAATTACTTCAACCAGCCGCTCGCGCAGGACCCGCTGGGGCTCACGCGCGCGCAGGCTGATGCCAACCCGCGCCAGGCCG
TGCCCGCCGCAACCCAGTTTGATACTGGCAAGACCGTCGAACAGACCCAGGCCGGCGTGGTGGTGGACCACAAGCTGAGC
CAGGCCGACAGCCTGCAGGGACGGCTCTATGTGGGCACGCGCCAGCTTTACCAGCGGCTCGGCATGAGCGGCATCGCCGC
GACGTCTTCCGGCGGTATTGTCGATCTGGACCGAAGCTACGGCGGCGCCGCGCTGTCGTGGACGCGGCGAACCACCGCCG
GTGGCCTGCCGCTGCAATGGACCGCCGGCGTGGAGGCCAATGGCATGCGCGACGGCCGCACGGGGTTCGTCAACAACAAC
GGCACCCAGGGCGCGCTGCGCCGCGACGAAACCGACAAGGCCAGCGACTACGGCGCGTTTGCGCAGTTCGACTGGACCCT
CCATCCGTCCTGGGAACTCGTGGGCGGCGTGCGGGCCAGCCGCGTGAAACTCAGCATCGACGACCATTTCGTCACCGCCG
CCAGCCCGGACGACAGCGGGTCCACCACGTACAACAATGTCAGCCCGGTGCTGGGGCTGGTCTGGCATGCACTGGATATG
TTGAACGTCTACGCCAACCTCGGCCGAGGCTTTGAATCGCCCACGCTGACCGAAGTGGCCTACGGACCGGGCGGCGTTGG
CAGCAACCTCGGGCTGCAGGCTTCCACCAGCCGCCAAGGCGAAATCGGCGTCAAGTGGCAGCAGCAGCGCCAGCGGCTGG
AGGCGGCGCTGTTCGACGCCGACAGCCATGACGAAATCGTGCCCCTGTCGAACAATGCCGGCCGCACGGTCTACCAGAAC
GTCGATGGGGTGCGCCGGCGCGGGCTGGAGCTGGCCTGGCGCGGAGGCTTTGGTGAGCAGGTCGGCGCAGCGGCGAATGG
CGTAGCCGGTAGCCGGTACGAGGCCGGGCTGGCCTATACCTACCTGTCCGCCTATTTCGGTGAGTCGTTCCTCAACGCGC
AGGGACAGACCGTAAATGCCGGGAACCGGTTGCCCGGCACGGCACGCCACAGCCTGAACTTCGACATCGCGTGGCGGCCG
CTGCCGCCGCTCGTGCTTGGCGCCGAGATGCATGTAGACAGCCGCATCTATGCCGACGACCTCAACACGCAGGCCGCGCC
AGGCTATGCCACGTTCAATCTGCGCGCCGGCTACGAATTCCGCCTCGGCAAGACGCGCCTGTTCGCGTTCGGCCGCATCG
ACAACATAACGGACCGCAAGTACATCGGCTCGGTCATCGTCAACGAGGCCAACGGCCGGTATTTCGAGCCCGCGCCCGGC
CGCCGCTTCTTCGTTGGCTTGCGCGCCGCGATGTAA

Upstream 100 bases:

>100_bases
TCGCTGCCGCCGCGAAAAGGGGTTTTCCCGCAACCCGTCGCATGGCAAATCCCGCGCAGACCATATAAAGTTATCCCGCA
TCCACCCAACCCGGCGCCGG

Downstream 100 bases:

>100_bases
GACACACGCGGACTTGCCACGCCACCCTCCGCCGAACTAAGGTTGCGGCTTTGGCCGGTAGTCCGGCCAGCCTCGGAACA
CCTCGGAGTACGCAGCCATG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 731

Protein sequence:

>731_residues
MDSTTAPASNRSTPMTTGGRQVLAIRRIVTRHSAASVFSLLASLAAAGQSAAAEPDVALPDVVVSASRSEQRRFDAPAAV
DSVPVDALRATSPLVNLSEVLTGVPGVAVRDRQNYSQDLQLSVRGFGTRSTFGVRGVRLYVDGIPATMPDGQGQTSTADL
ANASRVEVLRGPFAQMYGNASGGVVQVFTPDPPKDGFTGRASTGVGSDGQWQAGVSLGGGNDKLGGTLDAWTYQTDGYRD
HSAARRYQLNAKVVAQPTDATRVTGQFNYFNQPLAQDPLGLTRAQADANPRQAVPAATQFDTGKTVEQTQAGVVVDHKLS
QADSLQGRLYVGTRQLYQRLGMSGIAATSSGGIVDLDRSYGGAALSWTRRTTAGGLPLQWTAGVEANGMRDGRTGFVNNN
GTQGALRRDETDKASDYGAFAQFDWTLHPSWELVGGVRASRVKLSIDDHFVTAASPDDSGSTTYNNVSPVLGLVWHALDM
LNVYANLGRGFESPTLTEVAYGPGGVGSNLGLQASTSRQGEIGVKWQQQRQRLEAALFDADSHDEIVPLSNNAGRTVYQN
VDGVRRRGLELAWRGGFGEQVGAAANGVAGSRYEAGLAYTYLSAYFGESFLNAQGQTVNAGNRLPGTARHSLNFDIAWRP
LPPLVLGAEMHVDSRIYADDLNTQAAPGYATFNLRAGYEFRLGKTRLFAFGRIDNITDRKYIGSVIVNEANGRYFEPAPG
RRFFVGLRAAM

Sequences:

>Translated_731_residues
MDSTTAPASNRSTPMTTGGRQVLAIRRIVTRHSAASVFSLLASLAAAGQSAAAEPDVALPDVVVSASRSEQRRFDAPAAV
DSVPVDALRATSPLVNLSEVLTGVPGVAVRDRQNYSQDLQLSVRGFGTRSTFGVRGVRLYVDGIPATMPDGQGQTSTADL
ANASRVEVLRGPFAQMYGNASGGVVQVFTPDPPKDGFTGRASTGVGSDGQWQAGVSLGGGNDKLGGTLDAWTYQTDGYRD
HSAARRYQLNAKVVAQPTDATRVTGQFNYFNQPLAQDPLGLTRAQADANPRQAVPAATQFDTGKTVEQTQAGVVVDHKLS
QADSLQGRLYVGTRQLYQRLGMSGIAATSSGGIVDLDRSYGGAALSWTRRTTAGGLPLQWTAGVEANGMRDGRTGFVNNN
GTQGALRRDETDKASDYGAFAQFDWTLHPSWELVGGVRASRVKLSIDDHFVTAASPDDSGSTTYNNVSPVLGLVWHALDM
LNVYANLGRGFESPTLTEVAYGPGGVGSNLGLQASTSRQGEIGVKWQQQRQRLEAALFDADSHDEIVPLSNNAGRTVYQN
VDGVRRRGLELAWRGGFGEQVGAAANGVAGSRYEAGLAYTYLSAYFGESFLNAQGQTVNAGNRLPGTARHSLNFDIAWRP
LPPLVLGAEMHVDSRIYADDLNTQAAPGYATFNLRAGYEFRLGKTRLFAFGRIDNITDRKYIGSVIVNEANGRYFEPAPG
RRFFVGLRAAM
>Mature_731_residues
MDSTTAPASNRSTPMTTGGRQVLAIRRIVTRHSAASVFSLLASLAAAGQSAAAEPDVALPDVVVSASRSEQRRFDAPAAV
DSVPVDALRATSPLVNLSEVLTGVPGVAVRDRQNYSQDLQLSVRGFGTRSTFGVRGVRLYVDGIPATMPDGQGQTSTADL
ANASRVEVLRGPFAQMYGNASGGVVQVFTPDPPKDGFTGRASTGVGSDGQWQAGVSLGGGNDKLGGTLDAWTYQTDGYRD
HSAARRYQLNAKVVAQPTDATRVTGQFNYFNQPLAQDPLGLTRAQADANPRQAVPAATQFDTGKTVEQTQAGVVVDHKLS
QADSLQGRLYVGTRQLYQRLGMSGIAATSSGGIVDLDRSYGGAALSWTRRTTAGGLPLQWTAGVEANGMRDGRTGFVNNN
GTQGALRRDETDKASDYGAFAQFDWTLHPSWELVGGVRASRVKLSIDDHFVTAASPDDSGSTTYNNVSPVLGLVWHALDM
LNVYANLGRGFESPTLTEVAYGPGGVGSNLGLQASTSRQGEIGVKWQQQRQRLEAALFDADSHDEIVPLSNNAGRTVYQN
VDGVRRRGLELAWRGGFGEQVGAAANGVAGSRYEAGLAYTYLSAYFGESFLNAQGQTVNAGNRLPGTARHSLNFDIAWRP
LPPLVLGAEMHVDSRIYADDLNTQAAPGYATFNLRAGYEFRLGKTRLFAFGRIDNITDRKYIGSVIVNEANGRYFEPAPG
RRFFVGLRAAM

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=690, Percent_Identity=41.8840579710145, Blast_Score=469, Evalue=1e-133,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77920; Mature: 77920

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTTAPASNRSTPMTTGGRQVLAIRRIVTRHSAASVFSLLASLAAAGQSAAAEPDVALP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
DVVVSASRSEQRRFDAPAAVDSVPVDALRATSPLVNLSEVLTGVPGVAVRDRQNYSQDLQ
HHHEECCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCCEE
LSVRGFGTRSTFGVRGVRLYVDGIPATMPDGQGQTSTADLANASRVEVLRGPFAQMYGNA
EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHCCHHHHCCCC
SGGVVQVFTPDPPKDGFTGRASTGVGSDGQWQAGVSLGGGNDKLGGTLDAWTYQTDGYRD
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCCCCCCEEEEEEECCCCCC
HSAARRYQLNAKVVAQPTDATRVTGQFNYFNQPLAQDPLGLTRAQADANPRQAVPAATQF
CCHHHEEEECEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCCHHCCCCCCCC
DTGKTVEQTQAGVVVDHKLSQADSLQGRLYVGTRQLYQRLGMSGIAATSSGGIVDLDRSY
CCCCCHHHHCCCEEEECCCCCCCCCCCEEEECHHHHHHHHCCCCEEECCCCCEEEECCCC
GGAALSWTRRTTAGGLPLQWTAGVEANGMRDGRTGFVNNNGTQGALRRDETDKASDYGAF
CCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCE
AQFDWTLHPSWELVGGVRASRVKLSIDDHFVTAASPDDSGSTTYNNVSPVLGLVWHALDM
EEEEEEECCCHHHHCCCEEEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
LNVYANLGRGFESPTLTEVAYGPGGVGSNLGLQASTSRQGEIGVKWQQQRQRLEAALFDA
HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCC
DSHDEIVPLSNNAGRTVYQNVDGVRRRGLELAWRGGFGEQVGAAANGVAGSRYEAGLAYT
CCCCCEEECCCCCCCHHHHCCHHHHHCCCEEEEECCCCHHHCCHHCCCCCCCCCCCHHHH
YLSAYFGESFLNAQGQTVNAGNRLPGTARHSLNFDIAWRPLPPLVLGAEMHVDSRIYADD
HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCEEECCEECCCCEEEECC
LNTQAAPGYATFNLRAGYEFRLGKTRLFAFGRIDNITDRKYIGSVIVNEANGRYFEPAPG
CCCCCCCCEEEEEEECCEEEECCCEEEEEECCCCCCCCHHHHCEEEEECCCCCEECCCCC
RRFFVGLRAAM
CEEEEEEEECC
>Mature Secondary Structure
MDSTTAPASNRSTPMTTGGRQVLAIRRIVTRHSAASVFSLLASLAAAGQSAAAEPDVALP
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
DVVVSASRSEQRRFDAPAAVDSVPVDALRATSPLVNLSEVLTGVPGVAVRDRQNYSQDLQ
HHHEECCCHHHHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCCEE
LSVRGFGTRSTFGVRGVRLYVDGIPATMPDGQGQTSTADLANASRVEVLRGPFAQMYGNA
EEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHCCCCHHHHHHCCHHHHCCCC
SGGVVQVFTPDPPKDGFTGRASTGVGSDGQWQAGVSLGGGNDKLGGTLDAWTYQTDGYRD
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECEEECCCCCCCCCCEEEEEEECCCCCC
HSAARRYQLNAKVVAQPTDATRVTGQFNYFNQPLAQDPLGLTRAQADANPRQAVPAATQF
CCHHHEEEECEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCCHHCCCCCCCC
DTGKTVEQTQAGVVVDHKLSQADSLQGRLYVGTRQLYQRLGMSGIAATSSGGIVDLDRSY
CCCCCHHHHCCCEEEECCCCCCCCCCCEEEECHHHHHHHHCCCCEEECCCCCEEEECCCC
GGAALSWTRRTTAGGLPLQWTAGVEANGMRDGRTGFVNNNGTQGALRRDETDKASDYGAF
CCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCE
AQFDWTLHPSWELVGGVRASRVKLSIDDHFVTAASPDDSGSTTYNNVSPVLGLVWHALDM
EEEEEEECCCHHHHCCCEEEEEEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
LNVYANLGRGFESPTLTEVAYGPGGVGSNLGLQASTSRQGEIGVKWQQQRQRLEAALFDA
HHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCC
DSHDEIVPLSNNAGRTVYQNVDGVRRRGLELAWRGGFGEQVGAAANGVAGSRYEAGLAYT
CCCCCEEECCCCCCCHHHHCCHHHHHCCCEEEEECCCCHHHCCHHCCCCCCCCCCCHHHH
YLSAYFGESFLNAQGQTVNAGNRLPGTARHSLNFDIAWRPLPPLVLGAEMHVDSRIYADD
HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEEEECCCCCEEECCEECCCCEEEECC
LNTQAAPGYATFNLRAGYEFRLGKTRLFAFGRIDNITDRKYIGSVIVNEANGRYFEPAPG
CCCCCCCCEEEEEEECCEEEECCCEEEEEECCCCCCCCHHHHCEEEEECCCCCEECCCCC
RRFFVGLRAAM
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]