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The map label for this gene is ndoB [H]

Identifier: 73538640

GI number: 73538640

Start: 1515625

End: 1516866

Strand: Reverse

Name: ndoB [H]

Synonym: Reut_B4815

Alternate gene names: 73538640

Gene position: 1516866-1515625 (Counterclockwise)

Preceding gene: 73538641

Following gene: 73538639

Centisome position: 55.64

GC content: 63.53

Gene sequence:

>1242_bases
ATGAAAGTATCGGCAGACATTGGTGCGCTGGTGGAACGGCGCAAGCAAGGCTACAGCCTCGAGGCGCCTTTCTATCAGAG
CGAGGAGATTTTCGCGCTCGATATGGAAGCGATCTTCCGCAAGCACTGGATCCAGGTGGCGGTCGAGCCAGACGTGCCGG
AGCCGGGCGACTACATAACCGTCGAGCTGGGCCACGACTCGATCCTGGTCGTGCGCGACGACGACATGCAAGTACGCGCC
TTCCATAACGTGTGCCGCCACCGCGGCGCGCGCCTGTGCAACGAGGACAAGGGCACGGTCGGCAACATCGTCTGCCCGTA
CCACAGCTGGACCTACAACCTGACCGGCGACCTCATGTTCGCCGAGCACATGGGCGAGAAGTTCGACCGGTGCAAGCACA
GCCTGAAATCCGTGCACGTGCAGAACCTCGCGGGCCTGATCTTCGTCTGCCTGGCGGACGAGCCGCCCGCCGACTTCGCG
GCGATGCGCGCCGCGATGGAGCCCTATTTGCTGCCGCATGACCTGCCGAACACGAAGATCGCCGCGCAGGTCGACATCAT
CGAGGAGGGCAACTGGAAGCTCACGATGGAGAACAACCGCGAGTGCTATCACTGCGTGGCGAACCATCCCGAGCTGACCA
TCTCGCTGTATGAGTATGGGTTCGGCTATCAGCAGTCGCCGGCCAACGCCGAGGGCATGGAAGCGTTCGAGAAGACCTGC
ATCGCGCGCGCGGCGCAGTGGGAAGCGCTGAACCTGCCGTCAGCCGAGATCGAGCGCCTGCTCGAAAGAACCGGCTTCCG
TACGCAGCGCTTGCCGCTCGACCGCAGCGGCGAGTCGCAGACGCTCGACGCGAAGGTCGCCTCGAAGAAGCTGCTCGGCA
AGTTCGAGCAGGCCGACCTGGGCGGGCTCTCGTTCTGGACGCAGCCGAACTCATGGCATCACTTCATGAGCGACCACATC
GTCACGTTCTCGGTGATTCCGCTGTCGGCCGGCAAAACGCTCGTACGCACGAAGTGGCTCGTCCACAAGGATGCGCAGGA
AGGCGTCGACTACGACGTGGCGAACCTGACGGCGGTGTGGAACGCGACCAATGACCAGGACCGCGTGCTCGTCGAATATT
CGCAGCGCGGCTCGGCAAGCAGCGCGTACGAGCCTGGCCCCTACTCGCCGTTCACCGAAGGCCTCGTCGAAAAGTTCTCG
GCCTGGTATATCCGCCGGCTCGCAGAGCACGTCGGCGCATAG

Upstream 100 bases:

>100_bases
GTCATCCTCGCCTACTTGCGCGAGCATCAACTCATTGACTACTGAGGTTGCCGGTCCATCGGCAAACAAACCAGGAATGC
AGGGAATCCGGAGCCAGACG

Downstream 100 bases:

>100_bases
GCGCAAGCAAAGGAAGCGGAGATGGAGATGATGCGCGATGCAGTCCAATTCGAGCCAGCCGACAGCCGGGTGACGCGCCC
GTCGTTCTGGAGTTCGCTCC

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: Naphthalene 1,2-dioxygenase ISP alpha [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MKVSADIGALVERRKQGYSLEAPFYQSEEIFALDMEAIFRKHWIQVAVEPDVPEPGDYITVELGHDSILVVRDDDMQVRA
FHNVCRHRGARLCNEDKGTVGNIVCPYHSWTYNLTGDLMFAEHMGEKFDRCKHSLKSVHVQNLAGLIFVCLADEPPADFA
AMRAAMEPYLLPHDLPNTKIAAQVDIIEEGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQQSPANAEGMEAFEKTC
IARAAQWEALNLPSAEIERLLERTGFRTQRLPLDRSGESQTLDAKVASKKLLGKFEQADLGGLSFWTQPNSWHHFMSDHI
VTFSVIPLSAGKTLVRTKWLVHKDAQEGVDYDVANLTAVWNATNDQDRVLVEYSQRGSASSAYEPGPYSPFTEGLVEKFS
AWYIRRLAEHVGA

Sequences:

>Translated_413_residues
MKVSADIGALVERRKQGYSLEAPFYQSEEIFALDMEAIFRKHWIQVAVEPDVPEPGDYITVELGHDSILVVRDDDMQVRA
FHNVCRHRGARLCNEDKGTVGNIVCPYHSWTYNLTGDLMFAEHMGEKFDRCKHSLKSVHVQNLAGLIFVCLADEPPADFA
AMRAAMEPYLLPHDLPNTKIAAQVDIIEEGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQQSPANAEGMEAFEKTC
IARAAQWEALNLPSAEIERLLERTGFRTQRLPLDRSGESQTLDAKVASKKLLGKFEQADLGGLSFWTQPNSWHHFMSDHI
VTFSVIPLSAGKTLVRTKWLVHKDAQEGVDYDVANLTAVWNATNDQDRVLVEYSQRGSASSAYEPGPYSPFTEGLVEKFS
AWYIRRLAEHVGA
>Mature_413_residues
MKVSADIGALVERRKQGYSLEAPFYQSEEIFALDMEAIFRKHWIQVAVEPDVPEPGDYITVELGHDSILVVRDDDMQVRA
FHNVCRHRGARLCNEDKGTVGNIVCPYHSWTYNLTGDLMFAEHMGEKFDRCKHSLKSVHVQNLAGLIFVCLADEPPADFA
AMRAAMEPYLLPHDLPNTKIAAQVDIIEEGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQQSPANAEGMEAFEKTC
IARAAQWEALNLPSAEIERLLERTGFRTQRLPLDRSGESQTLDAKVASKKLLGKFEQADLGGLSFWTQPNSWHHFMSDHI
VTFSVIPLSAGKTLVRTKWLVHKDAQEGVDYDVANLTAVWNATNDQDRVLVEYSQRGSASSAYEPGPYSPFTEGLVEKFS
AWYIRRLAEHVGA

Specific function: Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol [H]

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=211, Percent_Identity=33.175355450237, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1788888, Length=195, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.12 [H]

Molecular weight: Translated: 46643; Mature: 46643

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSADIGALVERRKQGYSLEAPFYQSEEIFALDMEAIFRKHWIQVAVEPDVPEPGDYIT
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHEEEEECCCCCCCCCEEE
VELGHDSILVVRDDDMQVRAFHNVCRHRGARLCNEDKGTVGNIVCPYHSWTYNLTGDLMF
EEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEEECCCCCHH
AEHMGEKFDRCKHSLKSVHVQNLAGLIFVCLADEPPADFAAMRAAMEPYLLPHDLPNTKI
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEE
AAQVDIIEEGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQQSPANAEGMEAFEKTC
EEEEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
IARAAQWEALNLPSAEIERLLERTGFRTQRLPLDRSGESQTLDAKVASKKLLGKFEQADL
HHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCHHCCCC
GGLSFWTQPNSWHHFMSDHIVTFSVIPLSAGKTLVRTKWLVHKDAQEGVDYDVANLTAVW
CCEEEECCCCCHHHHHCCCEEEEEEEEECCCCHHHHHHHHEECCHHHCCCCCHHHEEEEE
NATNDQDRVLVEYSQRGSASSAYEPGPYSPFTEGLVEKFSAWYIRRLAEHVGA
CCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVSADIGALVERRKQGYSLEAPFYQSEEIFALDMEAIFRKHWIQVAVEPDVPEPGDYIT
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHEEEEECCCCCCCCCEEE
VELGHDSILVVRDDDMQVRAFHNVCRHRGARLCNEDKGTVGNIVCPYHSWTYNLTGDLMF
EEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEEECCCCCHH
AEHMGEKFDRCKHSLKSVHVQNLAGLIFVCLADEPPADFAAMRAAMEPYLLPHDLPNTKI
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEE
AAQVDIIEEGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQQSPANAEGMEAFEKTC
EEEEEEEECCCEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
IARAAQWEALNLPSAEIERLLERTGFRTQRLPLDRSGESQTLDAKVASKKLLGKFEQADL
HHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCHHCCCC
GGLSFWTQPNSWHHFMSDHIVTFSVIPLSAGKTLVRTKWLVHKDAQEGVDYDVANLTAVW
CCEEEECCCCCHHHHHCCCEEEEEEEEECCCCHHHHHHHHEECCHHHCCCCCHHHEEEEE
NATNDQDRVLVEYSQRGSASSAYEPGPYSPFTEGLVEKFSAWYIRRLAEHVGA
CCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA