Click here to switch to the map view.

The map label for this gene is ycaC [H]

Identifier: 73538552

GI number: 73538552

Start: 1427185

End: 1427883

Strand: Direct

Name: ycaC [H]

Synonym: Reut_B4727

Alternate gene names: 73538552

Gene position: 1427185-1427883 (Clockwise)

Preceding gene: 73538550

Following gene: 73538553

Centisome position: 52.35

GC content: 61.52

Gene sequence:

>699_bases
ATGTCGAACGCCAAGCTGCAAGTCCTGACCCCGCGCAATAGCCAGCTCATCATCATCGACCATCAGCCGCAGATGGCGTT
CGGCGTCCAGTCGATGGACCGCCAGACCATGAAGAACAATGTCGTGGGCCTGGCGAAGGCGGCGAAGATCTTCGAGGTGC
CGACCACCATCACCACGGTCGAAAGCGAATCGTTCTCGGGCTTCACGTATCCCGAACTGCTCGACGTGTTTCCGGGCAAG
GAAACGCTCGAACGCAGCTCGATGAATTCGTGGGATGACCAGAAGGTGCGTGACGCGCTCGCCGCGAACGGCCGCAAGAA
GATCGTTGTGGCCGGGCTGTGGACGGAGGTCTGCAACACCACCTTCGCGTTGAGCGCGATGCTGGAAGGCGACTACGAGA
TCTACATGGTGGCGGACGCGTCCGGCGGCACGACGAAGGAAGCGCACGACTATGCGATGCAACGCATGATCCAGGCCGGC
GTGGTACCGGTGACCTGGCAACAGGTCATGCTGGAATGGCAACGCGACTGGAAGAACCGCGAAACCTACGACGCCGTCAT
CGGTGTGGCCAAGGAACACTCGGGCGCCTACGGCATGGGCATCGACTATGCCTACACGATGGTGCACAAGGCGGCGCAGC
GCACGGCGACGACACACGCTTCGATTGCGCCGGTCCATGCGCCGGTGATCGAACACTAA

Upstream 100 bases:

>100_bases
GCGACCCTGGCTATAGTTCTGCCCATGGCGAAGAGCACAGCAAGTACCCCGCCAGATCTGAAGTTCAAACCAATTGAATT
TTCCATTTAGGAGAGACGCC

Downstream 100 bases:

>100_bases
GCACCGGCACGCCGCCTGAGTTGCAAATACAGGAGGGGCTACGGCCCCTTTGCTGCATCCCGATATACTCGCGACAAACC
AACCCCGGAGAGCACGCGTG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSNAKLQVLTPRNSQLIIIDHQPQMAFGVQSMDRQTMKNNVVGLAKAAKIFEVPTTITTVESESFSGFTYPELLDVFPGK
ETLERSSMNSWDDQKVRDALAANGRKKIVVAGLWTEVCNTTFALSAMLEGDYEIYMVADASGGTTKEAHDYAMQRMIQAG
VVPVTWQQVMLEWQRDWKNRETYDAVIGVAKEHSGAYGMGIDYAYTMVHKAAQRTATTHASIAPVHAPVIEH

Sequences:

>Translated_232_residues
MSNAKLQVLTPRNSQLIIIDHQPQMAFGVQSMDRQTMKNNVVGLAKAAKIFEVPTTITTVESESFSGFTYPELLDVFPGK
ETLERSSMNSWDDQKVRDALAANGRKKIVVAGLWTEVCNTTFALSAMLEGDYEIYMVADASGGTTKEAHDYAMQRMIQAG
VVPVTWQQVMLEWQRDWKNRETYDAVIGVAKEHSGAYGMGIDYAYTMVHKAAQRTATTHASIAPVHAPVIEH
>Mature_231_residues
SNAKLQVLTPRNSQLIIIDHQPQMAFGVQSMDRQTMKNNVVGLAKAAKIFEVPTTITTVESESFSGFTYPELLDVFPGKE
TLERSSMNSWDDQKVRDALAANGRKKIVVAGLWTEVCNTTFALSAMLEGDYEIYMVADASGGTTKEAHDYAMQRMIQAGV
VPVTWQQVMLEWQRDWKNRETYDAVIGVAKEHSGAYGMGIDYAYTMVHKAAQRTATTHASIAPVHAPVIEH

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=172, Percent_Identity=35.4651162790698, Blast_Score=111, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25761; Mature: 25629

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAKLQVLTPRNSQLIIIDHQPQMAFGVQSMDRQTMKNNVVGLAKAAKIFEVPTTITTV
CCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCEEEEE
ESESFSGFTYPELLDVFPGKETLERSSMNSWDDQKVRDALAANGRKKIVVAGLWTEVCNT
CCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHH
TFALSAMLEGDYEIYMVADASGGTTKEAHDYAMQRMIQAGVVPVTWQQVMLEWQRDWKNR
HHHHHHEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
ETYDAVIGVAKEHSGAYGMGIDYAYTMVHKAAQRTATTHASIAPVHAPVIEH
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNAKLQVLTPRNSQLIIIDHQPQMAFGVQSMDRQTMKNNVVGLAKAAKIFEVPTTITTV
CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCEEEEE
ESESFSGFTYPELLDVFPGKETLERSSMNSWDDQKVRDALAANGRKKIVVAGLWTEVCNT
CCCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHH
TFALSAMLEGDYEIYMVADASGGTTKEAHDYAMQRMIQAGVVPVTWQQVMLEWQRDWKNR
HHHHHHEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
ETYDAVIGVAKEHSGAYGMGIDYAYTMVHKAAQRTATTHASIAPVHAPVIEH
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]