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The map label for this gene is yfeR [H]

Identifier: 73538481

GI number: 73538481

Start: 1345178

End: 1346110

Strand: Reverse

Name: yfeR [H]

Synonym: Reut_B4655

Alternate gene names: 73538481

Gene position: 1346110-1345178 (Counterclockwise)

Preceding gene: 73538482

Following gene: 73538480

Centisome position: 49.38

GC content: 65.59

Gene sequence:

>933_bases
ATGAACATTTCACTTCCCCAACTGAAGGCATTCGCCGCCGTTGCCCGGCACAAGAGCTTTACGCGCGCCGCGGCTGAGCT
GGGCCTCACGCAATCGGCCGTGAGCCGCAGCGTGCGCGAGCTGGAAGAAGAAATCGACCAGCGCCTGTTCGACCGCACCA
CGCGCCAGGTCGAACTGACGGACGCCGGACAGCATCTGTCGCAACGCATCTGCCACCTGATCGAAGAGGTCGAGCAGACG
CTGCGTGAAAGCCAGGGTGCCGCGCGGCCATCGCAAGGCATGGTGCAGATTGCGACGGACCCGGTGCTCAGTTCGATGTC
CGTGCCCGCTTGGCTGGCCGGTTGCCGCAAGGCGTGGCCCGCGATCGCCATCCACCTGAAGGACCGTTCGCAGGAATCCG
TATTGCAGAGCGTGCGCAGCGGCGAAGTCGACTTCGGCATTGCCACCGATCCGCAATCGAGTGATGACCTCTATTGCGAG
CCGCTGTGCGTCGACCCGTATCACGCCGTGCTGCCCGCGCAGCATCCGCTCGCATCGCGTGACGCCATTGCATGGGGCGA
CCTGTCCAATGCCAACGTGTTCACGCTCGACCAGCAGTGCGGCGTGCAGCCCGTCGTGGAAAAAGCGCTCAGCCACCACC
ACGTGCGTGCCGGTTCGTTGCAATTGCTTGGGCATTTCGCTGCGGTGTTCGGCATGGTGGCGCTTGGGCTCGGCATCGGC
GTAGTGCCATCGCGCGCGCAGGCGGGCGGTCTTCATCCCGCAGCCGTCATGCGGCCGTTGCGGCCGCAGGTCACATCCAC
GGTCATGCTTGTGCGGCGCAAGAGCCGATCGCTGAAGCCCAACGCCGCGGCCATCTGGGATGCGCTGCGCGGACTGGAGT
ACCGCGATGCCGCCGAACCGGACCGGCAGCCGCCTGTTCCGGTGGAAGTCTAG

Upstream 100 bases:

>100_bases
TGAAACCATCCACGCTTGCCGCAGGAACTTCCGCTGCGACGCATCGCGGTACTGCGATGCCGTTGGCGCAACCGAAATGG
GACGGAGGAGGAGGGCGGTC

Downstream 100 bases:

>100_bases
GATTCAGGGCGGTTCCGGCCGCCGTTGACCGCTGTTGTATTGGAGCAAAACCAACACTGATATATTACATACAGGATATT
TACACATACTGCGGCGCAGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNISLPQLKAFAAVARHKSFTRAAAELGLTQSAVSRSVRELEEEIDQRLFDRTTRQVELTDAGQHLSQRICHLIEEVEQT
LRESQGAARPSQGMVQIATDPVLSSMSVPAWLAGCRKAWPAIAIHLKDRSQESVLQSVRSGEVDFGIATDPQSSDDLYCE
PLCVDPYHAVLPAQHPLASRDAIAWGDLSNANVFTLDQQCGVQPVVEKALSHHHVRAGSLQLLGHFAAVFGMVALGLGIG
VVPSRAQAGGLHPAAVMRPLRPQVTSTVMLVRRKSRSLKPNAAAIWDALRGLEYRDAAEPDRQPPVPVEV

Sequences:

>Translated_310_residues
MNISLPQLKAFAAVARHKSFTRAAAELGLTQSAVSRSVRELEEEIDQRLFDRTTRQVELTDAGQHLSQRICHLIEEVEQT
LRESQGAARPSQGMVQIATDPVLSSMSVPAWLAGCRKAWPAIAIHLKDRSQESVLQSVRSGEVDFGIATDPQSSDDLYCE
PLCVDPYHAVLPAQHPLASRDAIAWGDLSNANVFTLDQQCGVQPVVEKALSHHHVRAGSLQLLGHFAAVFGMVALGLGIG
VVPSRAQAGGLHPAAVMRPLRPQVTSTVMLVRRKSRSLKPNAAAIWDALRGLEYRDAAEPDRQPPVPVEV
>Mature_310_residues
MNISLPQLKAFAAVARHKSFTRAAAELGLTQSAVSRSVRELEEEIDQRLFDRTTRQVELTDAGQHLSQRICHLIEEVEQT
LRESQGAARPSQGMVQIATDPVLSSMSVPAWLAGCRKAWPAIAIHLKDRSQESVLQSVRSGEVDFGIATDPQSSDDLYCE
PLCVDPYHAVLPAQHPLASRDAIAWGDLSNANVFTLDQQCGVQPVVEKALSHHHVRAGSLQLLGHFAAVFGMVALGLGIG
VVPSRAQAGGLHPAAVMRPLRPQVTSTVMLVRRKSRSLKPNAAAIWDALRGLEYRDAAEPDRQPPVPVEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=40.6896551724138, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=27.6094276094276, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI157672245, Length=212, Percent_Identity=31.1320754716981, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788481, Length=311, Percent_Identity=30.2250803858521, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788887, Length=280, Percent_Identity=26.0714285714286, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787879, Length=253, Percent_Identity=26.0869565217391, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790399, Length=298, Percent_Identity=24.8322147651007, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787128, Length=141, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787601, Length=159, Percent_Identity=30.188679245283, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787530, Length=254, Percent_Identity=25.9842519685039, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=25.5144032921811, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=244, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787806, Length=288, Percent_Identity=23.2638888888889, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=172, Percent_Identity=28.4883720930233, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786508, Length=177, Percent_Identity=28.2485875706215, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081904, Length=181, Percent_Identity=24.8618784530387, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787589, Length=155, Percent_Identity=34.1935483870968, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=25.2032520325203, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1790262, Length=245, Percent_Identity=26.530612244898, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789204, Length=271, Percent_Identity=23.6162361623616, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789506, Length=165, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786713, Length=175, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=284, Percent_Identity=23.2394366197183, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082132, Length=281, Percent_Identity=24.5551601423488, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=26.7206477732794, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33695; Mature: 33695

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISLPQLKAFAAVARHKSFTRAAAELGLTQSAVSRSVRELEEEIDQRLFDRTTRQVELT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEC
DAGQHLSQRICHLIEEVEQTLRESQGAARPSQGMVQIATDPVLSSMSVPAWLAGCRKAWP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHCCC
AIAIHLKDRSQESVLQSVRSGEVDFGIATDPQSSDDLYCEPLCVDPYHAVLPAQHPLASR
EEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCEECCCHHHHCCCCCCCCCC
DAIAWGDLSNANVFTLDQQCGVQPVVEKALSHHHVRAGSLQLLGHFAAVFGMVALGLGIG
CCEEECCCCCCEEEEECHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
VVPSRAQAGGLHPAAVMRPLRPQVTSTVMLVRRKSRSLKPNAAAIWDALRGLEYRDAAEP
CCCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
DRQPPVPVEV
CCCCCCCCCC
>Mature Secondary Structure
MNISLPQLKAFAAVARHKSFTRAAAELGLTQSAVSRSVRELEEEIDQRLFDRTTRQVELT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEC
DAGQHLSQRICHLIEEVEQTLRESQGAARPSQGMVQIATDPVLSSMSVPAWLAGCRKAWP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHCCHHHHHHHHHHCCC
AIAIHLKDRSQESVLQSVRSGEVDFGIATDPQSSDDLYCEPLCVDPYHAVLPAQHPLASR
EEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCEECCCHHHHCCCCCCCCCC
DAIAWGDLSNANVFTLDQQCGVQPVVEKALSHHHVRAGSLQLLGHFAAVFGMVALGLGIG
CCEEECCCCCCEEEEECHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
VVPSRAQAGGLHPAAVMRPLRPQVTSTVMLVRRKSRSLKPNAAAIWDALRGLEYRDAAEP
CCCCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
DRQPPVPVEV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]