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The map label for this gene is yfdE [H]

Identifier: 73538379

GI number: 73538379

Start: 1229712

End: 1230878

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B4552

Alternate gene names: 73538379

Gene position: 1229712-1230878 (Clockwise)

Preceding gene: 73538378

Following gene: 73538380

Centisome position: 45.11

GC content: 70.09

Gene sequence:

>1167_bases
ATGCAAGAGCAAAAGAAGGGACCGCTGGCCGGTGTCAGGATCATCGAACTGGCCGGCATAGGCCCGGGCCCGCTGGCCGG
CATGATGCTGGCCGACATGGGTGCCGAAGTGCTGCGCATCGAGCGCCCCGGCGAGACGGATCTCGGCGTCAGGCGCGAGC
GCCGCTTCGACCTGATGCTGCGCGGACGCAAGTCCATTGCGCTGGACCTGAAGGACCCGCAGGCCGTGGCTGCGGTGCTG
GACCTCGTCGAGTCGGCCGATGCGCTGATCGAGGGCTTCCGCCCGGGCGTCACGGAGCGGCTGGGGCTTGGCCCCGATGC
CTGCCTCGCGCGCAATCCGAAGCTGGTCTATGGCCGCATCACCGGGTGGGGCCAGACGGGTCCGCTCGCGCACACTGCCG
GGCATGACGTGAACTACATCGCGCTGACCGGCGCGCTCAATGCGATCGGCCAGCGCGGCCAGCGACCCGCGATTCCGCCG
GCTTATCTCGGCGACTTCGCAGGCGGCGGCATGTTCCTGCTGGCCGGCGTGCTCGCCGCGCTGGTGGAAGCGGGCAAGTC
CGGTAAGGGACAAGTGGTGGACGCCGCCATCGTCGACGGCGCCGCCGCGCTCGGCAGCGTGTTCTTCGGGCTGGTAGCCG
CAGGTCAGTGGAACCCGGAGCGCGGCACCAACGTGCTCGACTCGGGCGCGCATTACTACAACGTCTACCAGTGCAAGGAC
GGCGGCTGGATTTCGGTGGGCCCGATCGAGGCGCGCTTCTATCGTGACCTGCTGGACCGCATTGGCATCGACCCCGCCAG
CCTTGGCGAACAACTCGACCCGGCCAACTGGGAAGCCGCGGGCAATCGCCTGGCGGAGCTGTTCCGCACGCGCACGCGGG
ACGCGTGGTGCGCACTGCTGGAGGGCACCGACGCCTGCTTCGCGCCGGTACTCAGCTATGAGGAAGCGCCGCAGCACGCC
CACCTCAAGGCACGCGAGACCTTCGTCGAGATCGACGGCATCGTGCAGCCCGCCCCCGCCCCGCGCTTCAGCCGCACGCC
ATCGGCGCTGCCCACGGCGCCGCGCGCGCCCGACGTTCGCGATTACGCCCACACGCTTGCGGGCTGGCTGCCTGCCGCGC
GGATTGCCGAAGTGCGCGCGCTCGCCGAGAAAGCCGACCGGGACTGA

Upstream 100 bases:

>100_bases
GTTCCAGCTTGCCGAGATCGCGCGCACGCGCGAGATCGTCAAGAGCGCAACCATTCCGGTCGAGTAAGCGACCGGAGACA
AAAAGGACGAGAGAAACCGC

Downstream 100 bases:

>100_bases
ATACCGGCCAACCTGTTTTCACGACCAAAGACCATGAGCAATTTTCTTGATATCCGCCGCGATGGCCATGTCGCCATCGT
CACCATGAACCGCCCGGAGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MQEQKKGPLAGVRIIELAGIGPGPLAGMMLADMGAEVLRIERPGETDLGVRRERRFDLMLRGRKSIALDLKDPQAVAAVL
DLVESADALIEGFRPGVTERLGLGPDACLARNPKLVYGRITGWGQTGPLAHTAGHDVNYIALTGALNAIGQRGQRPAIPP
AYLGDFAGGGMFLLAGVLAALVEAGKSGKGQVVDAAIVDGAAALGSVFFGLVAAGQWNPERGTNVLDSGAHYYNVYQCKD
GGWISVGPIEARFYRDLLDRIGIDPASLGEQLDPANWEAAGNRLAELFRTRTRDAWCALLEGTDACFAPVLSYEEAPQHA
HLKARETFVEIDGIVQPAPAPRFSRTPSALPTAPRAPDVRDYAHTLAGWLPAARIAEVRALAEKADRD

Sequences:

>Translated_388_residues
MQEQKKGPLAGVRIIELAGIGPGPLAGMMLADMGAEVLRIERPGETDLGVRRERRFDLMLRGRKSIALDLKDPQAVAAVL
DLVESADALIEGFRPGVTERLGLGPDACLARNPKLVYGRITGWGQTGPLAHTAGHDVNYIALTGALNAIGQRGQRPAIPP
AYLGDFAGGGMFLLAGVLAALVEAGKSGKGQVVDAAIVDGAAALGSVFFGLVAAGQWNPERGTNVLDSGAHYYNVYQCKD
GGWISVGPIEARFYRDLLDRIGIDPASLGEQLDPANWEAAGNRLAELFRTRTRDAWCALLEGTDACFAPVLSYEEAPQHA
HLKARETFVEIDGIVQPAPAPRFSRTPSALPTAPRAPDVRDYAHTLAGWLPAARIAEVRALAEKADRD
>Mature_388_residues
MQEQKKGPLAGVRIIELAGIGPGPLAGMMLADMGAEVLRIERPGETDLGVRRERRFDLMLRGRKSIALDLKDPQAVAAVL
DLVESADALIEGFRPGVTERLGLGPDACLARNPKLVYGRITGWGQTGPLAHTAGHDVNYIALTGALNAIGQRGQRPAIPP
AYLGDFAGGGMFLLAGVLAALVEAGKSGKGQVVDAAIVDGAAALGSVFFGLVAAGQWNPERGTNVLDSGAHYYNVYQCKD
GGWISVGPIEARFYRDLLDRIGIDPASLGEQLDPANWEAAGNRLAELFRTRTRDAWCALLEGTDACFAPVLSYEEAPQHA
HLKARETFVEIDGIVQPAPAPRFSRTPSALPTAPRAPDVRDYAHTLAGWLPAARIAEVRALAEKADRD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=361, Percent_Identity=39.612188365651, Blast_Score=291, Evalue=1e-78,
Organism=Homo sapiens, GI42794625, Length=361, Percent_Identity=39.612188365651, Blast_Score=291, Evalue=1e-78,
Organism=Homo sapiens, GI266458393, Length=256, Percent_Identity=42.578125, Blast_Score=221, Evalue=8e-58,
Organism=Homo sapiens, GI266458397, Length=253, Percent_Identity=42.6877470355731, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI300863128, Length=362, Percent_Identity=28.7292817679558, Blast_Score=142, Evalue=5e-34,
Organism=Homo sapiens, GI300863124, Length=388, Percent_Identity=27.5773195876289, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=44.0559440559441, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=44.0559440559441, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI13376042, Length=388, Percent_Identity=25.5154639175258, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI300863126, Length=357, Percent_Identity=26.3305322128852, Blast_Score=107, Evalue=2e-23,
Organism=Escherichia coli, GI87082093, Length=372, Percent_Identity=27.6881720430108, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788717, Length=208, Percent_Identity=31.7307692307692, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786222, Length=374, Percent_Identity=28.8770053475936, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=353, Percent_Identity=32.8611898016997, Blast_Score=194, Evalue=6e-50,
Organism=Caenorhabditis elegans, GI32564160, Length=337, Percent_Identity=33.5311572700297, Blast_Score=191, Evalue=5e-49,
Organism=Drosophila melanogaster, GI24585488, Length=349, Percent_Identity=41.8338108882521, Blast_Score=280, Evalue=1e-75,
Organism=Drosophila melanogaster, GI24648431, Length=348, Percent_Identity=28.448275862069, Blast_Score=123, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41279; Mature: 41279

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEQKKGPLAGVRIIELAGIGPGPLAGMMLADMGAEVLRIERPGETDLGVRRERRFDLML
CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHE
RGRKSIALDLKDPQAVAAVLDLVESADALIEGFRPGVTERLGLGPDACLARNPKLVYGRI
ECCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHCCCCCEEEEEE
TGWGQTGPLAHTAGHDVNYIALTGALNAIGQRGQRPAIPPAYLGDFAGGGMFLLAGVLAA
ECCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
LVEAGKSGKGQVVDAAIVDGAAALGSVFFGLVAAGQWNPERGTNVLDSGAHYYNVYQCKD
HHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEEECC
GGWISVGPIEARFYRDLLDRIGIDPASLGEQLDPANWEAAGNRLAELFRTRTRDAWCALL
CCEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
EGTDACFAPVLSYEEAPQHAHLKARETFVEIDGIVQPAPAPRFSRTPSALPTAPRAPDVR
CCCCHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
DYAHTLAGWLPAARIAEVRALAEKADRD
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQEQKKGPLAGVRIIELAGIGPGPLAGMMLADMGAEVLRIERPGETDLGVRRERRFDLML
CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHE
RGRKSIALDLKDPQAVAAVLDLVESADALIEGFRPGVTERLGLGPDACLARNPKLVYGRI
ECCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHCCCCCEEEEEE
TGWGQTGPLAHTAGHDVNYIALTGALNAIGQRGQRPAIPPAYLGDFAGGGMFLLAGVLAA
ECCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHH
LVEAGKSGKGQVVDAAIVDGAAALGSVFFGLVAAGQWNPERGTNVLDSGAHYYNVYQCKD
HHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEEECC
GGWISVGPIEARFYRDLLDRIGIDPASLGEQLDPANWEAAGNRLAELFRTRTRDAWCALL
CCEEEECCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
EGTDACFAPVLSYEEAPQHAHLKARETFVEIDGIVQPAPAPRFSRTPSALPTAPRAPDVR
CCCCHHHHHHHHHHCCCCCCHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
DYAHTLAGWLPAARIAEVRALAEKADRD
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]