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The map label for this gene is ybhD [H]

Identifier: 73538129

GI number: 73538129

Start: 957981

End: 958889

Strand: Reverse

Name: ybhD [H]

Synonym: Reut_B4299

Alternate gene names: 73538129

Gene position: 958889-957981 (Counterclockwise)

Preceding gene: 73538132

Following gene: 73538124

Centisome position: 35.17

GC content: 63.59

Gene sequence:

>909_bases
ATGGACGATGTACTGGACCGGAAGCGGGCGATGTGCCTGCTGCAGATCATCGAGACCGGCTCGGTACGCGGCGCGGCCGA
TGTGCTGGAACTGGACCCGTCAGTGGTCAGTCGGGCTGTGGCCAAGCTGGAGCAAGACACCGGCCTCGCGCTGCTGGAGC
GGCGCGGGCGCGGCGTGGTGGCGACGGATGCCGGCCGCCTGCTCGCGTTGTTTGCGCGTCGACAGCAAGACCTCAGTGAT
ACCTTCCTGGCCGAGGTCAACAATTTGAAGAATTCGCAGCGCGGTCACGTGGAACTGGCCTTTGGCGAGGGCTTTATCGA
CCTGGTGCTCGAACCGGTGCTGCAGGGCTTCCTGCACAAGCATCCCGACGTCACGTACAACATCCGCGTGGCGGGCACGG
AGGAAACGGTCCGCTGCATCCTTGAGGACCTCGCGCATATCGCCTTTGTGTTCCAGCCGCCGAACGACGTGCGGCTGCGC
TCGCATTATTCACGGCTTGCGCCGATTCGCGTGCATGTGCGCAGGGACCATCCGCTGGCGCGCAGGCGAAAGCCGCTCAC
GCTGGCGGACCTGGCGCCGCATCAGGGCGCTTCACTGACGGAGTCGTTCGGCGTGCGCAAGCATATCGAGGCCGCGGAAA
TCGAAGAGCACATCACCCTGAACCATATGCTCACGACGAACTCGTTCAAGGTGTTGTGGGAATTCGCGGCGATGGGGCTG
GGCTACATCATGACGCCGCGCTCGGTGGCGCTGAAGGGACCGCAATTCGCTGACCTGGTGTCGTTGCCGCTGGCCAATCC
GATCCTGAACAACAGCCGCATCCACATCATTACCCGTGCAGGCCGGCCACTTTCGCCAGTGGCGGACCGCATGCTGCGGC
ATGTAATGAAGGCCTTCCCGCAGGTATGA

Upstream 100 bases:

>100_bases
ACGCGCACGCGTCCGGCATCCATGACAATGATTGCGGTAAAACGTTGTATAAAATGCAACGATTGAAGTTCGCCACGTTG
CGCGGATCGGGGGAGGAATG

Downstream 100 bases:

>100_bases
GCTATTCGTTGACGCCGTTCTCGCGCAGCAGGCGCTCGCATTCGTCAAGCATGTCATGCGCGAAAGCCGACTGGTAATTC
GGGTCGAGCGCTTCCATCAT

Product: regulatory protein LysR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDDVLDRKRAMCLLQIIETGSVRGAADVLELDPSVVSRAVAKLEQDTGLALLERRGRGVVATDAGRLLALFARRQQDLSD
TFLAEVNNLKNSQRGHVELAFGEGFIDLVLEPVLQGFLHKHPDVTYNIRVAGTEETVRCILEDLAHIAFVFQPPNDVRLR
SHYSRLAPIRVHVRRDHPLARRRKPLTLADLAPHQGASLTESFGVRKHIEAAEIEEHITLNHMLTTNSFKVLWEFAAMGL
GYIMTPRSVALKGPQFADLVSLPLANPILNNSRIHIITRAGRPLSPVADRMLRHVMKAFPQV

Sequences:

>Translated_302_residues
MDDVLDRKRAMCLLQIIETGSVRGAADVLELDPSVVSRAVAKLEQDTGLALLERRGRGVVATDAGRLLALFARRQQDLSD
TFLAEVNNLKNSQRGHVELAFGEGFIDLVLEPVLQGFLHKHPDVTYNIRVAGTEETVRCILEDLAHIAFVFQPPNDVRLR
SHYSRLAPIRVHVRRDHPLARRRKPLTLADLAPHQGASLTESFGVRKHIEAAEIEEHITLNHMLTTNSFKVLWEFAAMGL
GYIMTPRSVALKGPQFADLVSLPLANPILNNSRIHIITRAGRPLSPVADRMLRHVMKAFPQV
>Mature_302_residues
MDDVLDRKRAMCLLQIIETGSVRGAADVLELDPSVVSRAVAKLEQDTGLALLERRGRGVVATDAGRLLALFARRQQDLSD
TFLAEVNNLKNSQRGHVELAFGEGFIDLVLEPVLQGFLHKHPDVTYNIRVAGTEETVRCILEDLAHIAFVFQPPNDVRLR
SHYSRLAPIRVHVRRDHPLARRRKPLTLADLAPHQGASLTESFGVRKHIEAAEIEEHITLNHMLTTNSFKVLWEFAAMGL
GYIMTPRSVALKGPQFADLVSLPLANPILNNSRIHIITRAGRPLSPVADRMLRHVMKAFPQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=277, Percent_Identity=24.5487364620939, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI157672245, Length=263, Percent_Identity=22.4334600760456, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33717; Mature: 33717

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDVLDRKRAMCLLQIIETGSVRGAADVLELDPSVVSRAVAKLEQDTGLALLERRGRGVV
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCEEE
ATDAGRLLALFARRQQDLSDTFLAEVNNLKNSQRGHVELAFGEGFIDLVLEPVLQGFLHK
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
HPDVTYNIRVAGTEETVRCILEDLAHIAFVFQPPNDVRLRSHYSRLAPIRVHVRRDHPLA
CCCCEEEEEEECCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCEEEEEEECCCCHH
RRRKPLTLADLAPHQGASLTESFGVRKHIEAAEIEEHITLNHMLTTNSFKVLWEFAAMGL
HHCCCCCCCCCCCCCCCCHHHHHCHHHHCHHHHHHHHEEEEEEEECCHHHHHHHHHHHCC
GYIMTPRSVALKGPQFADLVSLPLANPILNNSRIHIITRAGRPLSPVADRMLRHVMKAFP
CEEECCCHHEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC
QV
CC
>Mature Secondary Structure
MDDVLDRKRAMCLLQIIETGSVRGAADVLELDPSVVSRAVAKLEQDTGLALLERRGRGVV
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCEEE
ATDAGRLLALFARRQQDLSDTFLAEVNNLKNSQRGHVELAFGEGFIDLVLEPVLQGFLHK
EECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
HPDVTYNIRVAGTEETVRCILEDLAHIAFVFQPPNDVRLRSHYSRLAPIRVHVRRDHPLA
CCCCEEEEEEECCHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHCCEEEEEEECCCCHH
RRRKPLTLADLAPHQGASLTESFGVRKHIEAAEIEEHITLNHMLTTNSFKVLWEFAAMGL
HHCCCCCCCCCCCCCCCCHHHHHCHHHHCHHHHHHHHEEEEEEEECCHHHHHHHHHHHCC
GYIMTPRSVALKGPQFADLVSLPLANPILNNSRIHIITRAGRPLSPVADRMLRHVMKAFP
CEEECCCHHEECCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC
QV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]