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The map label for this gene is rbsB [H]

Identifier: 73537967

GI number: 73537967

Start: 775547

End: 776515

Strand: Direct

Name: rbsB [H]

Synonym: Reut_B4136

Alternate gene names: 73537967

Gene position: 775547-776515 (Clockwise)

Preceding gene: 73537966

Following gene: 73537968

Centisome position: 28.45

GC content: 63.47

Gene sequence:

>969_bases
ATGCAAGCACGCAACCTGAAATCACTCGCCGCCCTGCTCGCCTTCGGCGTGCTGGCCATGCCCGCCGCGCATGCGGACGG
CGAGCGCATTGCCGTCTTCACCAAGAACCAGACCAACCCGTATTTCCAGGTCCTGCGTCAGGGCGCGGATTCGGCGGCCA
AGAGCATGAACGCGCGCATTACCCACTACATCCCGACCAAGCCGGACAGTATTCCCGAGCAGATGAGCCAGATCGAGGAC
GTGATCGTCAAGAAGGCCGACGCCGTGGTGTTCGTGCCGGTCGACTACAAGGCAATGGGTCCCGGCGTGAAGAAGATCAA
TGCGGCCAATATCCCGGTGGTCAACGTGACCGACCGCAGCGACGTGGGCAACTTCGTCTCGTTTGTCGGTGCCAGCGACT
ATGACCTTGGCCTGAAAACCGCCACCTACCTGTTCAAGACCATGGGCGGCAAGGGCAATGTGGTGGTGCTCGAAGGCATC
AAGGGTTCGCTGACCAATGTCGACCGCATCCGCGGCGTGCAGGATGCGCTCAAGGCCTTCCCCGGCATCAAGGTGGTGGC
GTCACAGCCGGCTAACTACCAGCGCCTGCAAGCCCTGCAGGTGATGGAGAACCTGATGCAGTCGTTCCCGAAGATCGACG
CCGTCTTCGCCGCCAACGACGCCATGGCCATCGGCGCGATCGAAGCGCTGGAGGGCGCCAACCGCAAGGCGCTCGTCACC
GGCATCAACGGCACCAAGGAAGCGATCGACGCCATCAAGGCGGGCACGCTGCTCGCCACCGGCGACTACAACGGCTTCGT
ACAGGGATGCCTGGGCACCATGGCCGCCATCCGCAAGCTGCGCGGACAGCCGGTCAGGCAGGACATCGTGCTGCCTGCTA
CCGTAATTGACAAGACCAACTACCAGCCGCTCGACGTGCCCGCCGACAAACGCGCCTGCCCCCGCTGGGAAGACGCGACC
AAGGCCTGA

Upstream 100 bases:

>100_bases
GCGGTGGTCCTAGACACGCTGTCCCGTCGCCGTCTCGGCAAGTCATGAAGCAAGTTCCCACACGTACGGAAAACATTCCA
ACGATCCCAGGAGAGAAGAC

Downstream 100 bases:

>100_bases
CGCGCGCGGGTTTTTCCAGGAGCTACAACCATGCGCAATCTCGACGAAGAAACCATCACCCAGGCAGTGCTGGCCCGCAA
TGTCGATATGAAGGACCGCC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MQARNLKSLAALLAFGVLAMPAAHADGERIAVFTKNQTNPYFQVLRQGADSAAKSMNARITHYIPTKPDSIPEQMSQIED
VIVKKADAVVFVPVDYKAMGPGVKKINAANIPVVNVTDRSDVGNFVSFVGASDYDLGLKTATYLFKTMGGKGNVVVLEGI
KGSLTNVDRIRGVQDALKAFPGIKVVASQPANYQRLQALQVMENLMQSFPKIDAVFAANDAMAIGAIEALEGANRKALVT
GINGTKEAIDAIKAGTLLATGDYNGFVQGCLGTMAAIRKLRGQPVRQDIVLPATVIDKTNYQPLDVPADKRACPRWEDAT
KA

Sequences:

>Translated_322_residues
MQARNLKSLAALLAFGVLAMPAAHADGERIAVFTKNQTNPYFQVLRQGADSAAKSMNARITHYIPTKPDSIPEQMSQIED
VIVKKADAVVFVPVDYKAMGPGVKKINAANIPVVNVTDRSDVGNFVSFVGASDYDLGLKTATYLFKTMGGKGNVVVLEGI
KGSLTNVDRIRGVQDALKAFPGIKVVASQPANYQRLQALQVMENLMQSFPKIDAVFAANDAMAIGAIEALEGANRKALVT
GINGTKEAIDAIKAGTLLATGDYNGFVQGCLGTMAAIRKLRGQPVRQDIVLPATVIDKTNYQPLDVPADKRACPRWEDAT
KA
>Mature_322_residues
MQARNLKSLAALLAFGVLAMPAAHADGERIAVFTKNQTNPYFQVLRQGADSAAKSMNARITHYIPTKPDSIPEQMSQIED
VIVKKADAVVFVPVDYKAMGPGVKKINAANIPVVNVTDRSDVGNFVSFVGASDYDLGLKTATYLFKTMGGKGNVVVLEGI
KGSLTNVDRIRGVQDALKAFPGIKVVASQPANYQRLQALQVMENLMQSFPKIDAVFAANDAMAIGAIEALEGANRKALVT
GINGTKEAIDAIKAGTLLATGDYNGFVQGCLGTMAAIRKLRGQPVRQDIVLPATVIDKTNYQPLDVPADKRACPRWEDAT
KA

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=286, Percent_Identity=33.5664335664336, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1790526, Length=255, Percent_Identity=29.8039215686275, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790674, Length=171, Percent_Identity=32.1637426900585, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 34419; Mature: 34419

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQARNLKSLAALLAFGVLAMPAAHADGERIAVFTKNQTNPYFQVLRQGADSAAKSMNARI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE
THYIPTKPDSIPEQMSQIEDVIVKKADAVVFVPVDYKAMGPGVKKINAANIPVVNVTDRS
EEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCEECCCCCCEEEECCCC
DVGNFVSFVGASDYDLGLKTATYLFKTMGGKGNVVVLEGIKGSLTNVDRIRGVQDALKAF
CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
PGIKVVASQPANYQRLQALQVMENLMQSFPKIDAVFAANDAMAIGAIEALEGANRKALVT
CCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
GINGTKEAIDAIKAGTLLATGDYNGFVQGCLGTMAAIRKLRGQPVRQDIVLPATVIDKTN
CCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHEECCCC
YQPLDVPADKRACPRWEDATKA
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQARNLKSLAALLAFGVLAMPAAHADGERIAVFTKNQTNPYFQVLRQGADSAAKSMNARI
CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE
THYIPTKPDSIPEQMSQIEDVIVKKADAVVFVPVDYKAMGPGVKKINAANIPVVNVTDRS
EEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCEECCCCCCEEEECCCC
DVGNFVSFVGASDYDLGLKTATYLFKTMGGKGNVVVLEGIKGSLTNVDRIRGVQDALKAF
CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
PGIKVVASQPANYQRLQALQVMENLMQSFPKIDAVFAANDAMAIGAIEALEGANRKALVT
CCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
GINGTKEAIDAIKAGTLLATGDYNGFVQGCLGTMAAIRKLRGQPVRQDIVLPATVIDKTN
CCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHEECCCC
YQPLDVPADKRACPRWEDATKA
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]