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The map label for this gene is rbsC [H]

Identifier: 73537965

GI number: 73537965

Start: 773558

End: 774532

Strand: Direct

Name: rbsC [H]

Synonym: Reut_B4134

Alternate gene names: 73537965

Gene position: 773558-774532 (Clockwise)

Preceding gene: 73537964

Following gene: 73537966

Centisome position: 28.38

GC content: 66.46

Gene sequence:

>975_bases
ATGCCTGATACGACTGCCGCAACCGCCTCCCGTGCCCTGCCCCTGGCTTTCGTGCCAATACTCGGCAAGCTGCCCGGCGC
GGCCTGGGTGCTGCTTCTGCTTACCGTTGCCTTCGCGGCAATGGGCCAGGGCTTTCTGTCGACAGCCAACCTGCTCAACG
TCGGCACGCAATCCACGATCCTGCTGCTGATCGCGCTGCCGATGACGCTGATCATCATGACCGAGGGGCTGGATCTCTCC
ATGGGCGCCGTGCTCGCGCTGTGCGGCGTAGTGCTTGCCATGGTGATCGTGGCCACCGGCTCGCTGCTGCTGGCCCTGGC
CGCTGCCATCGGTGTGGGGCTCGCGTTCGGCCTGCTCAATGGCCTGCTGGTGGCACGGCTGGGCATTCCGCCGTTCGTGT
CGACGCTGGGCACGCTGGGTGTTGCCCAAGGTGTGGCGCTCGTATTGACCGACGGGCAAAGCGTGGTCGGCGTCGGCGAC
ACGATCCCCCTGCTCTATTCCGGCGAACTGCTCCGCATTCCTGTGCCGCTGTGGCTGGCCGTTGCCACCTACGCCCTCTT
CCACTGGCTCTTGTATCGCACACGATTCGGCGCCTATGTGTTCGCGCTCGGCGGCAACCGTGAGGCGCTGAAGTTCGCAG
GCGTCTCCGTCAATCGCTGGCTGATCGCGGTCTACATGCTCGGCGGCGCCATGGCGGGCGTAGCGGCGCTGCTGCTGACC
GCACGCATGAATGCCGGACACCCGACCGCCTCCATCGGACTGGAGTTCGAGGCGATTGCCGCGGTAGCCGTCGGCGGCAC
CACGTTCGACCGCGGCAACGGCTGGCTGCCGGGCACGGTGCTTGGCGTGCTCGCCGTCGGCGTGCTGCGCAACGGCCTGA
ACCTGATCGGCGTGCAGTCTTCGGTGCAGGTGGCGGCCATCGGCCTGCTGGTGCTGGTGGTCCTGTTGATCGAATCCTTC
AAGGGGAAAGCATGA

Upstream 100 bases:

>100_bases
GTATGCGACCGCACCTATGTCATGCGCGGCGGCCGCGTCGCCGGCGAGCTTGCGCATGACGCCATGACCGAGGAAAGCAT
TCTGCAACTGGGGATGAACG

Downstream 100 bases:

>100_bases
GCTCCGCCATCCTGAACATGCCGCTGTCCGCGGACTCCCGCGCGCTTGTCGGCCGCCTGCTGGCGCTGGCCGTGCTGTGC
GCGCTGCTGTCGGTATCGTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 323

Protein sequence:

>324_residues
MPDTTAATASRALPLAFVPILGKLPGAAWVLLLLTVAFAAMGQGFLSTANLLNVGTQSTILLLIALPMTLIIMTEGLDLS
MGAVLALCGVVLAMVIVATGSLLLALAAAIGVGLAFGLLNGLLVARLGIPPFVSTLGTLGVAQGVALVLTDGQSVVGVGD
TIPLLYSGELLRIPVPLWLAVATYALFHWLLYRTRFGAYVFALGGNREALKFAGVSVNRWLIAVYMLGGAMAGVAALLLT
ARMNAGHPTASIGLEFEAIAAVAVGGTTFDRGNGWLPGTVLGVLAVGVLRNGLNLIGVQSSVQVAAIGLLVLVVLLIESF
KGKA

Sequences:

>Translated_324_residues
MPDTTAATASRALPLAFVPILGKLPGAAWVLLLLTVAFAAMGQGFLSTANLLNVGTQSTILLLIALPMTLIIMTEGLDLS
MGAVLALCGVVLAMVIVATGSLLLALAAAIGVGLAFGLLNGLLVARLGIPPFVSTLGTLGVAQGVALVLTDGQSVVGVGD
TIPLLYSGELLRIPVPLWLAVATYALFHWLLYRTRFGAYVFALGGNREALKFAGVSVNRWLIAVYMLGGAMAGVAALLLT
ARMNAGHPTASIGLEFEAIAAVAVGGTTFDRGNGWLPGTVLGVLAVGVLRNGLNLIGVQSSVQVAAIGLLVLVVLLIESF
KGKA
>Mature_323_residues
PDTTAATASRALPLAFVPILGKLPGAAWVLLLLTVAFAAMGQGFLSTANLLNVGTQSTILLLIALPMTLIIMTEGLDLSM
GAVLALCGVVLAMVIVATGSLLLALAAAIGVGLAFGLLNGLLVARLGIPPFVSTLGTLGVAQGVALVLTDGQSVVGVGDT
IPLLYSGELLRIPVPLWLAVATYALFHWLLYRTRFGAYVFALGGNREALKFAGVSVNRWLIAVYMLGGAMAGVAALLLTA
RMNAGHPTASIGLEFEAIAAVAVGGTTFDRGNGWLPGTVLGVLAVGVLRNGLNLIGVQSSVQVAAIGLLVLVVLLIESFK
GKA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=319, Percent_Identity=32.9153605015674, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790191, Length=295, Percent_Identity=36.6101694915254, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI145693152, Length=295, Percent_Identity=32.8813559322034, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788896, Length=287, Percent_Identity=35.191637630662, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI87082395, Length=291, Percent_Identity=34.7079037800687, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787793, Length=222, Percent_Identity=34.2342342342342, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI145693214, Length=281, Percent_Identity=35.5871886120996, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787794, Length=298, Percent_Identity=30.5369127516779, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788471, Length=291, Percent_Identity=33.6769759450172, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1789992, Length=127, Percent_Identity=36.2204724409449, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33018; Mature: 32887

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDTTAATASRALPLAFVPILGKLPGAAWVLLLLTVAFAAMGQGFLSTANLLNVGTQSTI
CCCCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH
LLLIALPMTLIIMTEGLDLSMGAVLALCGVVLAMVIVATGSLLLALAAAIGVGLAFGLLN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLVARLGIPPFVSTLGTLGVAQGVALVLTDGQSVVGVGDTIPLLYSGELLRIPVPLWLA
HHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCEECCCEEEECHHHHHH
VATYALFHWLLYRTRFGAYVFALGGNREALKFAGVSVNRWLIAVYMLGGAMAGVAALLLT
HHHHHHHHHHHHHHHHCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARMNAGHPTASIGLEFEAIAAVAVGGTTFDRGNGWLPGTVLGVLAVGVLRNGLNLIGVQS
HHCCCCCCCHHCCCCHHHHHHEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCC
SVQVAAIGLLVLVVLLIESFKGKA
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PDTTAATASRALPLAFVPILGKLPGAAWVLLLLTVAFAAMGQGFLSTANLLNVGTQSTI
CCCCHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH
LLLIALPMTLIIMTEGLDLSMGAVLALCGVVLAMVIVATGSLLLALAAAIGVGLAFGLLN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLLVARLGIPPFVSTLGTLGVAQGVALVLTDGQSVVGVGDTIPLLYSGELLRIPVPLWLA
HHHHHHCCCCHHHHHHHHHHHHCCEEEEEECCCEEEECCCCCCCEECCCEEEECHHHHHH
VATYALFHWLLYRTRFGAYVFALGGNREALKFAGVSVNRWLIAVYMLGGAMAGVAALLLT
HHHHHHHHHHHHHHHHCEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
ARMNAGHPTASIGLEFEAIAAVAVGGTTFDRGNGWLPGTVLGVLAVGVLRNGLNLIGVQS
HHCCCCCCCHHCCCCHHHHHHEEECCCEEECCCCCCHHHHHHHHHHHHHHCCCCEEECCC
SVQVAAIGLLVLVVLLIESFKGKA
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]