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The map label for this gene is yfdE [H]

Identifier: 73537713

GI number: 73537713

Start: 499720

End: 501099

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_B3879

Alternate gene names: 73537713

Gene position: 501099-499720 (Counterclockwise)

Preceding gene: 73537717

Following gene: 73537712

Centisome position: 18.38

GC content: 66.16

Gene sequence:

>1380_bases
TTGGGGCGATGCTCATTTGGCAGACGGTTGAAGTCAATATCAGGGCGAACCGGTTCCGCTGTGCGAAACCAGGATTGTCC
GCGATGCGCAGGTCTGCCACTGTCGAAGCCGTTCCGACTGACCCGTAGCGGCACCGACATGACACCTCCCCTTGCACAGA
CCACCTTCTCCAGGAATGCCCCGCAAGATCGCGGCCCGCTTGCGGGCGTGCGTATCCTCGACATGGCGACCGTCGTCGCC
GGCCCGTTCTCCGCCACGCTGTGCGGCGATATGGGAGCCGAAGTCGTCAAGCTGGAGCTGCCCGACGGCAGCGATCCGCT
GCGCAGCCTCGCGCCGGTCAAGGACGACGTCCCGCTGTACTGGAAGGTCACCAACCGAGGTAAGCGCGGCATCACTCTCG
ACGTACGCACGGAGGCGGGCCGTGAGTTGTTCCTGCGCATGCTCGGCGAGTTCGACGTGCTCGTGGAGAACTTCCGTACT
GGCACGCTCGCGCGCTGGGGCCTCGATCTCGCCACACTTCACGCGGCAAATCCGCGTCTGATCGTATTGCGCCTGACCGG
CTTCGGCCAGACCGGGCCCTATGCGGCACGCCCCGGCTTCGCACGCATTTTCGAGGCAATGAGCGGGCTGACAAATCTCG
CCGGCACCGAGGAGAGTGGCCCGATGCACATGAACTTCCCCATCGGCGACATGATTGCTGGTCTGTTCGGCGCGTTCGCC
ATATCGACAGCCATCGCCGAGCGGCGCGCCAACCCGGAATTGCGCGGCCGCGAGATCGACCTCGCCGCCACCGAGGCACT
GTTTCGCCTGCTCGAACCGCTCGCCGTCGAGCACGAGCAACTTGGCGTGGTGCGCCAGCGGGCCGGCAACCGCGCGACCT
ATACTGCGCCCTCGAACATGTACCGCACTGCAGACGGCGTGTGGATGACGCTGGTGGCCTCGTCCGACGCCACATTCCGG
CGCCTGGCGGAAGCGATGGACCAGCCGCAACTGCCGCTGTCCCCCGATTTCGCGGTGAACGCTGCGCGCATCCGTAACCT
GGAGCGGCTCGATGCGCTGATCGCCGCATGGTTCGCGGCGCGCGATGCCGATGCGGTGTCCGCGGCGCTCGAACGCTGCG
ACGTACCGTTCAGCAAAGTATTCACGATTGCCGACGTCATGGCCGACGCGCAAATGCAGGCACGCAGCGCCGTGATTCGC
ATGCCTGATCCGGACGTCGGCTCCGTGCCTGCGCCGTGCGTGGTGCCACGCTTTGGGGGGTATCAGCCGCCCGCACCCCG
CACCGGTCCCGCCACTGGCGAACACAACGACGAGTTCTACACCGAACTGGGTCTTGGCAAGGACGACCTCGCGCGGCTCG
CGCGGGACGGCGTCATCTGA

Upstream 100 bases:

>100_bases
CCGCGGGCCAGGTTGATGGCGAACTGGCGATCTGTCGCCAGTTCGTCGGAACTGGCAAGTCCGGGCAGTGGATTCGAGGT
CATGGAGGGATCCTGCAACA

Downstream 100 bases:

>100_bases
GTGCAGGCAGGAGCCGGTTTCCGTTGATCACCGTTGAATTGACGCTACAACAAGGAGACTCCTTGGGCACCCTGACCGAG
TTCCGCCAAGCGGCTCGCAC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 458

Protein sequence:

>459_residues
MGRCSFGRRLKSISGRTGSAVRNQDCPRCAGLPLSKPFRLTRSGTDMTPPLAQTTFSRNAPQDRGPLAGVRILDMATVVA
GPFSATLCGDMGAEVVKLELPDGSDPLRSLAPVKDDVPLYWKVTNRGKRGITLDVRTEAGRELFLRMLGEFDVLVENFRT
GTLARWGLDLATLHAANPRLIVLRLTGFGQTGPYAARPGFARIFEAMSGLTNLAGTEESGPMHMNFPIGDMIAGLFGAFA
ISTAIAERRANPELRGREIDLAATEALFRLLEPLAVEHEQLGVVRQRAGNRATYTAPSNMYRTADGVWMTLVASSDATFR
RLAEAMDQPQLPLSPDFAVNAARIRNLERLDALIAAWFAARDADAVSAALERCDVPFSKVFTIADVMADAQMQARSAVIR
MPDPDVGSVPAPCVVPRFGGYQPPAPRTGPATGEHNDEFYTELGLGKDDLARLARDGVI

Sequences:

>Translated_459_residues
MGRCSFGRRLKSISGRTGSAVRNQDCPRCAGLPLSKPFRLTRSGTDMTPPLAQTTFSRNAPQDRGPLAGVRILDMATVVA
GPFSATLCGDMGAEVVKLELPDGSDPLRSLAPVKDDVPLYWKVTNRGKRGITLDVRTEAGRELFLRMLGEFDVLVENFRT
GTLARWGLDLATLHAANPRLIVLRLTGFGQTGPYAARPGFARIFEAMSGLTNLAGTEESGPMHMNFPIGDMIAGLFGAFA
ISTAIAERRANPELRGREIDLAATEALFRLLEPLAVEHEQLGVVRQRAGNRATYTAPSNMYRTADGVWMTLVASSDATFR
RLAEAMDQPQLPLSPDFAVNAARIRNLERLDALIAAWFAARDADAVSAALERCDVPFSKVFTIADVMADAQMQARSAVIR
MPDPDVGSVPAPCVVPRFGGYQPPAPRTGPATGEHNDEFYTELGLGKDDLARLARDGVI
>Mature_458_residues
GRCSFGRRLKSISGRTGSAVRNQDCPRCAGLPLSKPFRLTRSGTDMTPPLAQTTFSRNAPQDRGPLAGVRILDMATVVAG
PFSATLCGDMGAEVVKLELPDGSDPLRSLAPVKDDVPLYWKVTNRGKRGITLDVRTEAGRELFLRMLGEFDVLVENFRTG
TLARWGLDLATLHAANPRLIVLRLTGFGQTGPYAARPGFARIFEAMSGLTNLAGTEESGPMHMNFPIGDMIAGLFGAFAI
STAIAERRANPELRGREIDLAATEALFRLLEPLAVEHEQLGVVRQRAGNRATYTAPSNMYRTADGVWMTLVASSDATFRR
LAEAMDQPQLPLSPDFAVNAARIRNLERLDALIAAWFAARDADAVSAALERCDVPFSKVFTIADVMADAQMQARSAVIRM
PDPDVGSVPAPCVVPRFGGYQPPAPRTGPATGEHNDEFYTELGLGKDDLARLARDGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=398, Percent_Identity=27.3869346733668, Blast_Score=167, Evalue=3e-41,
Organism=Homo sapiens, GI300863124, Length=424, Percent_Identity=25.9433962264151, Blast_Score=152, Evalue=6e-37,
Organism=Homo sapiens, GI300863126, Length=400, Percent_Identity=26, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI13376042, Length=424, Percent_Identity=23.5849056603774, Blast_Score=119, Evalue=5e-27,
Organism=Homo sapiens, GI42794625, Length=396, Percent_Identity=26.010101010101, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI266456254, Length=396, Percent_Identity=26.010101010101, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=27.9245283018868, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI266458397, Length=250, Percent_Identity=29.2, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=32.1917808219178, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=32.1917808219178, Blast_Score=77, Evalue=5e-14,
Organism=Escherichia coli, GI87082093, Length=383, Percent_Identity=30.5483028720627, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=22.0623501199041, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1786222, Length=402, Percent_Identity=24.6268656716418, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI115535051, Length=349, Percent_Identity=25.214899713467, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=243, Percent_Identity=26.3374485596708, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=31.7617866004963, Blast_Score=193, Evalue=2e-49,
Organism=Drosophila melanogaster, GI24585488, Length=400, Percent_Identity=26.5, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 49611; Mature: 49480

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRCSFGRRLKSISGRTGSAVRNQDCPRCAGLPLSKPFRLTRSGTDMTPPLAQTTFSRNA
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCC
PQDRGPLAGVRILDMATVVAGPFSATLCGDMGAEVVKLELPDGSDPLRSLAPVKDDVPLY
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCEE
WKVTNRGKRGITLDVRTEAGRELFLRMLGEFDVLVENFRTGTLARWGLDLATLHAANPRL
EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCEE
IVLRLTGFGQTGPYAARPGFARIFEAMSGLTNLAGTEESGPMHMNFPIGDMIAGLFGAFA
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHH
ISTAIAERRANPELRGREIDLAATEALFRLLEPLAVEHEQLGVVRQRAGNRATYTAPSNM
HHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
YRTADGVWMTLVASSDATFRRLAEAMDQPQLPLSPDFAVNAARIRNLERLDALIAAWFAA
EECCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RDADAVSAALERCDVPFSKVFTIADVMADAQMQARSAVIRMPDPDVGSVPAPCVVPRFGG
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCEECCCCCC
YQPPAPRTGPATGEHNDEFYTELGLGKDDLARLARDGVI
CCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
GRCSFGRRLKSISGRTGSAVRNQDCPRCAGLPLSKPFRLTRSGTDMTPPLAQTTFSRNA
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCC
PQDRGPLAGVRILDMATVVAGPFSATLCGDMGAEVVKLELPDGSDPLRSLAPVKDDVPLY
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCCCCCEE
WKVTNRGKRGITLDVRTEAGRELFLRMLGEFDVLVENFRTGTLARWGLDLATLHAANPRL
EEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCEE
IVLRLTGFGQTGPYAARPGFARIFEAMSGLTNLAGTEESGPMHMNFPIGDMIAGLFGAFA
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHH
ISTAIAERRANPELRGREIDLAATEALFRLLEPLAVEHEQLGVVRQRAGNRATYTAPSNM
HHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
YRTADGVWMTLVASSDATFRRLAEAMDQPQLPLSPDFAVNAARIRNLERLDALIAAWFAA
EECCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RDADAVSAALERCDVPFSKVFTIADVMADAQMQARSAVIRMPDPDVGSVPAPCVVPRFGG
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCEECCCCCC
YQPPAPRTGPATGEHNDEFYTELGLGKDDLARLARDGVI
CCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]