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The map label for this gene is yfdE [H]

Identifier: 73537381

GI number: 73537381

Start: 95111

End: 96346

Strand: Direct

Name: yfdE [H]

Synonym: Reut_B3546

Alternate gene names: 73537381

Gene position: 95111-96346 (Clockwise)

Preceding gene: 73537380

Following gene: 73537383

Centisome position: 3.49

GC content: 67.64

Gene sequence:

>1236_bases
ATGGCGCCCGCCATGCAGGGCGCACTGGCCGGTGTCCGGGTGCTCGACCTGTCGCGCATCCTGGCCGGGCCGTGGTGCGC
GCAGAACCTGGCGGATCTCGGCGCGGAAGTCATCAAGGTGGAACGCCCCCGGGTCGGCGACGACACGCGCTCCTGGGGCC
CGCCATGGTTGCCGGATCCTGAAGGCCAGCCTTCGCGCGATGCCACCTACTTCGCCGGCGCCAATCGCGGCAAGCAGTCG
CTGACGCTTGACATCGCGAGCCCGGAAGGGCAGGCGATCGTGCGCGAACTCGCGGCCAAGTCGCACATCGTCCTCGAGAA
CTACAAGGTCGGCGACCTGAAGCGCTACGGGCTCGACTATGAAAGCCTCAAGGCGATCAATCCGGCGCTGGTCTATTGCT
CGATTACCGGCTATGGCCAGACCGGGCCCAGCGCGCACAAGCCGGGCTACGACTTCATCTTCCAGGGCATCGGCGGACTG
ATGAGCGTGACCGGCGAGCGCGACGACCTGCCCGGTGGCGGTCCGCAGAAGGTCGGCGTGGCGGTGGTAGACGTGCTGAC
CGGCATGTACGCGACCGTGGCTGTGCTTGCCGCACTGCGGCATGCCGAGCGCACGGGCGAAGGCCAGCATATCGACATGG
CCCTGCTCGACGCCGTGGTGGCCGTGGGCGCGACGCCGATCATCGCCCAGCGCATTACCGGCCAGGCCATGCCGCGCTAT
GGCAATGCGCACGCGAACATGGTGCCGTACCACGTCTTTGCGACGTCGGATGGCTACATGATTGTCGCGGCCGGCAACGA
CGGCCAGTGGCAGGCGTATTGCCGGGGTATCGAGCGTCCGGATCTGGCCGTCGACGAGCGCTTTGCCACGGGCTCGGGTC
GTATCATCCACCGCGAATTGCTGGTGCCGATGCTCGAGGCCCATATGCGCACACGTCCGACCGCACTCTGGGTCGAGGCG
CTGGAGGCGCAGGGCATTCCGTGCGGGCCGATCAACGACTACGCGCAGGTGCTCGACGACCCGCAGGTCCGTCATCGCGA
ACTGCAGGTCGACCTGGTCCGCAAGGACGGTGCGATCTGCCCGACGGTCAAGAGCCCGCTGCGGCTGTCAACCACGCCGG
TGCAATATGACGCGCCGCCGCCGCGCCTTGGCGAACACACGGAACGTGTGCTCGCCGAAGTGCTCGGTTTGTCCGCGGAG
CGGATCGCTGCACTGCGGGAGCAGGGCGTGGTCTGA

Upstream 100 bases:

>100_bases
ACGCCGGAATCGATTGGCGAGATCGCCATGCCGGCCATGCGCAACAGCTTCTTCAAGCTCGAGCGCTCGCCCGACGTGAT
CAGCTGGGATCCGATCTGAG

Downstream 100 bases:

>100_bases
GCGCGGGCATAAAAGCCCGACAGGGTCAAGCCGGCGATGGCGTTGTCATCGCCGGCTTTTTTTGTTTGCGCTGGTTTTGC
CGGCTCGTTAGCTGCCGGCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MAPAMQGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPRVGDDTRSWGPPWLPDPEGQPSRDATYFAGANRGKQS
LTLDIASPEGQAIVRELAAKSHIVLENYKVGDLKRYGLDYESLKAINPALVYCSITGYGQTGPSAHKPGYDFIFQGIGGL
MSVTGERDDLPGGGPQKVGVAVVDVLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRITGQAMPRY
GNAHANMVPYHVFATSDGYMIVAAGNDGQWQAYCRGIERPDLAVDERFATGSGRIIHRELLVPMLEAHMRTRPTALWVEA
LEAQGIPCGPINDYAQVLDDPQVRHRELQVDLVRKDGAICPTVKSPLRLSTTPVQYDAPPPRLGEHTERVLAEVLGLSAE
RIAALREQGVV

Sequences:

>Translated_411_residues
MAPAMQGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPRVGDDTRSWGPPWLPDPEGQPSRDATYFAGANRGKQS
LTLDIASPEGQAIVRELAAKSHIVLENYKVGDLKRYGLDYESLKAINPALVYCSITGYGQTGPSAHKPGYDFIFQGIGGL
MSVTGERDDLPGGGPQKVGVAVVDVLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRITGQAMPRY
GNAHANMVPYHVFATSDGYMIVAAGNDGQWQAYCRGIERPDLAVDERFATGSGRIIHRELLVPMLEAHMRTRPTALWVEA
LEAQGIPCGPINDYAQVLDDPQVRHRELQVDLVRKDGAICPTVKSPLRLSTTPVQYDAPPPRLGEHTERVLAEVLGLSAE
RIAALREQGVV
>Mature_410_residues
APAMQGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPRVGDDTRSWGPPWLPDPEGQPSRDATYFAGANRGKQSL
TLDIASPEGQAIVRELAAKSHIVLENYKVGDLKRYGLDYESLKAINPALVYCSITGYGQTGPSAHKPGYDFIFQGIGGLM
SVTGERDDLPGGGPQKVGVAVVDVLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRITGQAMPRYG
NAHANMVPYHVFATSDGYMIVAAGNDGQWQAYCRGIERPDLAVDERFATGSGRIIHRELLVPMLEAHMRTRPTALWVEAL
EAQGIPCGPINDYAQVLDDPQVRHRELQVDLVRKDGAICPTVKSPLRLSTTPVQYDAPPPRLGEHTERVLAEVLGLSAER
IAALREQGVV

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=404, Percent_Identity=40.3465346534653, Blast_Score=309, Evalue=3e-84,
Organism=Homo sapiens, GI300863124, Length=430, Percent_Identity=38.8372093023256, Blast_Score=296, Evalue=3e-80,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=35.4838709677419, Blast_Score=260, Evalue=2e-69,
Organism=Homo sapiens, GI13376042, Length=430, Percent_Identity=35.3488372093023, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI266456254, Length=411, Percent_Identity=25.0608272506083, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI42794625, Length=411, Percent_Identity=25.0608272506083, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458393, Length=264, Percent_Identity=29.1666666666667, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI266458397, Length=264, Percent_Identity=29.1666666666667, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=33.5526315789474, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=33.5526315789474, Blast_Score=91, Evalue=3e-18,
Organism=Escherichia coli, GI87082093, Length=390, Percent_Identity=31.025641025641, Blast_Score=223, Evalue=3e-59,
Organism=Escherichia coli, GI1788717, Length=429, Percent_Identity=30.5361305361305, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1786222, Length=416, Percent_Identity=26.2019230769231, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=232, Percent_Identity=25.8620689655172, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=345, Percent_Identity=21.7391304347826, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=41.439205955335, Blast_Score=310, Evalue=8e-85,
Organism=Drosophila melanogaster, GI24585488, Length=336, Percent_Identity=24.4047619047619, Blast_Score=99, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44213; Mature: 44082

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPAMQGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPRVGDDTRSWGPPWLPDP
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCC
EGQPSRDATYFAGANRGKQSLTLDIASPEGQAIVRELAAKSHIVLENYKVGDLKRYGLDY
CCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCH
ESLKAINPALVYCSITGYGQTGPSAHKPGYDFIFQGIGGLMSVTGERDDLPGGGPQKVGV
HHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
AVVDVLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRITGQAMPRY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
GNAHANMVPYHVFATSDGYMIVAAGNDGQWQAYCRGIERPDLAVDERFATGSGRIIHREL
CCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHH
LVPMLEAHMRTRPTALWVEALEAQGIPCGPINDYAQVLDDPQVRHRELQVDLVRKDGAIC
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHEEEEEECCCCCC
PTVKSPLRLSTTPVQYDAPPPRLGEHTERVLAEVLGLSAERIAALREQGVV
CCCCCCCEECCCCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
APAMQGALAGVRVLDLSRILAGPWCAQNLADLGAEVIKVERPRVGDDTRSWGPPWLPDP
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHEEECCCCCCCCCCCCCCCCCCCC
EGQPSRDATYFAGANRGKQSLTLDIASPEGQAIVRELAAKSHIVLENYKVGDLKRYGLDY
CCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCH
ESLKAINPALVYCSITGYGQTGPSAHKPGYDFIFQGIGGLMSVTGERDDLPGGGPQKVGV
HHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
AVVDVLTGMYATVAVLAALRHAERTGEGQHIDMALLDAVVAVGATPIIAQRITGQAMPRY
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
GNAHANMVPYHVFATSDGYMIVAAGNDGQWQAYCRGIERPDLAVDERFATGSGRIIHREL
CCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEHHHH
LVPMLEAHMRTRPTALWVEALEAQGIPCGPINDYAQVLDDPQVRHRELQVDLVRKDGAIC
HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHEEEEEECCCCCC
PTVKSPLRLSTTPVQYDAPPPRLGEHTERVLAEVLGLSAERIAALREQGVV
CCCCCCCEECCCCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]