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The map label for this gene is ligD

Identifier: 161611271

GI number: 161611271

Start: 1082413

End: 1084890

Strand: Reverse

Name: ligD

Synonym: Reut_B4424

Alternate gene names: NA

Gene position: 1084890-1082413 (Counterclockwise)

Preceding gene: 73538267

Following gene: 73538251

Centisome position: 39.8

GC content: 65.74

Gene sequence:

>2478_bases
ATGGCACGAACTTCCCTTGACCGATACCGCGAAAAACGTGATTTCCGCGTCACGGCCGAACCGGGCCCGCGCACCCGTGC
CCCCCGCGCCCCGGGGCCGCTGCGCTTTGTCGTGCAGAAACACTGGGCGCGACGCCTGCATTACGACTTCCGGCTCGAAC
TCGATGGCGTGTTGCTCAGCTGGGCCGTTCCCAAGGGACCCAGCTTCGATCCGGCCGAGAAGCGCATCGCCATCCACGTG
GAAGACCATCCCGTCGATTACGCGGCGTTCGAAGGCACCATCCCGCCGAAGCAGTATGGGGCGGGGTCCGTCATTGTGTG
GGACAACGGCACGTGGGAGCCGGTGGGCGACGCGCAGGCCGGCATGGCGAAAGGCAAGCTCGAATTCGCTTTGCACGGGC
AGAAGCTCGCCGGCCGCTGGGAACTGGTGCGTATCTCGAAGCCGGGCGATGCCGATGACCAGTGGATGTTGTTCAAGAAG
CGGGACCGGTGGGCGCGGCCGCATGCGGAGTTCGACGTCATTACGGCGTTGCCGGACAGCGTCGTCGCGCATCCACTCGG
GCAGGTCGAGGAACGCGAGAGCAGCAGTGCATCGCCGTCTGGTACCCCGGACTTGTCGGCCGCGGTACGGGCACCGCCGC
CGCCGCGCCTGGCTCCGCAACTGGCGACACCGACCGCAAAACTGCCCAGTGGTAGCGGCTGGATCATCGAGACCAAGTTC
GACGGATATCGGCTCCTGTCCCGGATCGTCGATGCCAGGGTGCACCTGATCACGCGCAACGGCCACGACTGGACGCGCAA
GCTCGGCGGTCTCGCCAAGGAAGTCGAGAAGCTGGATATCTCGGAAGGATGGCTCGACGGTGAGATCGTGGTGCTGCGCG
ACGGCCTGCCCGACTTCAATGCGCTGCAGAACGCCATCGACAGCCACCGCACCGAATCGATTGTCTACTTCCTTTTCGAC
ATTCCGTACTGGGAAGGACGCGACCTGCGCCGCGTGCCATTGCGGGAACGTCGGGCGCATCTGGCGCGCCTGGTCGATGC
CCGCTCCGAACGCGTGCGCTTCAGCGAAAGTTTCGAGGCGCCGGCGGATCAGGTCTTTCAGGCCGCGTCCCAGTTGGGGC
TGGAGGGCGTGATGCTGAAACGGGCGGACTCCGCCTACAGCTCTTCGCGCAATGCCGACTGGCTCAAGGCCAAATGCCGG
CTGCGCCAGGAGTTCGTGATCTGTGGCTATGGAGACAGGGAAGGTGCGCCCGGCGAAGTCGGCCGCCTGATGCTCGGCGT
CTATGAGGACGGGCAACTGCGCGATGCCGGCAACGTCGGCACGGGATGGGACAGCAAGACCGCCGCCGCGTTGCGGACGC
AGCTCGCAAAGCTGAAGACCGATACGGCGCCGTTTGCCGCTGCCTCGAAGGGCCGCAGCAGGTGGGGATCGAACAGGAAC
AGTACGCCGCATTGGGTCAAGCCGTCGCTGGTGGCGGAGGTCGAGTTCGCCGAGTGGACGCCGGCGGGCCAGGTACGCCA
GGCATCGTTCAAGGCGCTGCGCAGCGAAACGCCGGCGCGGGATGTCCGCAGGGAAGCGGTGCAGGTCGAGCCGGGTTCCA
CGCGCGCCGCCGTGAAAGTGACGCACCCTGAGCGAGTCATTGATGCCACCACCGGCATCACCAAGCTCGACCTCGTGCGC
TACTACGAGAGCGTGGCAGACTGGCTGCTGCCGCATCTCATGGCGCGGCCCGTGGCGCTGCTGCGCGCGCCCGATGGCAT
CGGCGGCGAGCTCTTCTTTCAGAAGCACGCTGAAACCACGAAGCTGCCGGGGCTGACCGAGCAGCCTGCGTCCCTGTGGC
CAGGGCATAGCCGCCTGCTGACGATCGACTCGGCCGAAGCGCTCGCCGGCGCCGCGCAACTGAATGTGGTCGAACTCCAC
ACATGGAACTCCACGGCGGCCGATCTCGCCCACCCGGATCGCGTCATCTTCGATCTGGACCCTGGGGAGGGCGTGTCCTG
GCAGCATGTACAGGAGGCAGCGATCCTGGTGCACACGCTACTGGGGGAGCTGGGGCTTGCAGCGTGGCTCAAGACCAGCG
GCGGAAAAGGGCTGCACGTCGTCGTGCCATTGGTGCCGGAACTCGACTATGACGCGGTAAAGTCCTTTTCCCGCGCCGCC
GTGCTGCACCTGGCCAAGACCCTGCCTCAGCGCTTCGTGGCCAGGTCCGGCGCAGGCAATCGCAAGGGTAGGGTGTTTGT
CGACTACTTGCGCAACGGCACCGGGCAGACCACCGCCGCAGCATTCTCGGCGCGTGCGCGACCCGGCATGGGTGTGTCGA
TGCCACTATCATGGGAGCAACTGCCGCAGCTCAAAAGCGCCGACCAGTGGACGGTCCGGAACGCCAGGGAATACCTGAGC
TTCCGGACGAATGATCCATGGAGTGACTACTGGTCGACGACGCAAAGCCTTCAAGATGCCATGGAGGCACTCGGCTGA

Upstream 100 bases:

>100_bases
GCGACACCTCCCAAGCGGCGAGCGGGAACCGGGTCCACGTGTTGGGGATGGCCCGATCCTTCATCTACGAGACAAGCAAG
CGTGCGCCTATGCTGTTTTC

Downstream 100 bases:

>100_bases
CGGTGTTCGTGATTGTCCTTCGTGACGTGGAGATTGCATTATGGCTGCGCGATCACTTGCTTCGCTTTCCCTCTCTTTCG
GCCTGGTCTCGATTCCGGTG

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 825; Mature: 824

Protein sequence:

>825_residues
MARTSLDRYREKRDFRVTAEPGPRTRAPRAPGPLRFVVQKHWARRLHYDFRLELDGVLLSWAVPKGPSFDPAEKRIAIHV
EDHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVGDAQAGMAKGKLEFALHGQKLAGRWELVRISKPGDADDQWMLFKK
RDRWARPHAEFDVITALPDSVVAHPLGQVEERESSSASPSGTPDLSAAVRAPPPPRLAPQLATPTAKLPSGSGWIIETKF
DGYRLLSRIVDARVHLITRNGHDWTRKLGGLAKEVEKLDISEGWLDGEIVVLRDGLPDFNALQNAIDSHRTESIVYFLFD
IPYWEGRDLRRVPLRERRAHLARLVDARSERVRFSESFEAPADQVFQAASQLGLEGVMLKRADSAYSSSRNADWLKAKCR
LRQEFVICGYGDREGAPGEVGRLMLGVYEDGQLRDAGNVGTGWDSKTAAALRTQLAKLKTDTAPFAAASKGRSRWGSNRN
STPHWVKPSLVAEVEFAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGSTRAAVKVTHPERVIDATTGITKLDLVR
YYESVADWLLPHLMARPVALLRAPDGIGGELFFQKHAETTKLPGLTEQPASLWPGHSRLLTIDSAEALAGAAQLNVVELH
TWNSTAADLAHPDRVIFDLDPGEGVSWQHVQEAAILVHTLLGELGLAAWLKTSGGKGLHVVVPLVPELDYDAVKSFSRAA
VLHLAKTLPQRFVARSGAGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQLPQLKSADQWTVRNAREYLS
FRTNDPWSDYWSTTQSLQDAMEALG

Sequences:

>Translated_825_residues
MARTSLDRYREKRDFRVTAEPGPRTRAPRAPGPLRFVVQKHWARRLHYDFRLELDGVLLSWAVPKGPSFDPAEKRIAIHV
EDHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVGDAQAGMAKGKLEFALHGQKLAGRWELVRISKPGDADDQWMLFKK
RDRWARPHAEFDVITALPDSVVAHPLGQVEERESSSASPSGTPDLSAAVRAPPPPRLAPQLATPTAKLPSGSGWIIETKF
DGYRLLSRIVDARVHLITRNGHDWTRKLGGLAKEVEKLDISEGWLDGEIVVLRDGLPDFNALQNAIDSHRTESIVYFLFD
IPYWEGRDLRRVPLRERRAHLARLVDARSERVRFSESFEAPADQVFQAASQLGLEGVMLKRADSAYSSSRNADWLKAKCR
LRQEFVICGYGDREGAPGEVGRLMLGVYEDGQLRDAGNVGTGWDSKTAAALRTQLAKLKTDTAPFAAASKGRSRWGSNRN
STPHWVKPSLVAEVEFAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGSTRAAVKVTHPERVIDATTGITKLDLVR
YYESVADWLLPHLMARPVALLRAPDGIGGELFFQKHAETTKLPGLTEQPASLWPGHSRLLTIDSAEALAGAAQLNVVELH
TWNSTAADLAHPDRVIFDLDPGEGVSWQHVQEAAILVHTLLGELGLAAWLKTSGGKGLHVVVPLVPELDYDAVKSFSRAA
VLHLAKTLPQRFVARSGAGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQLPQLKSADQWTVRNAREYLS
FRTNDPWSDYWSTTQSLQDAMEALG
>Mature_824_residues
ARTSLDRYREKRDFRVTAEPGPRTRAPRAPGPLRFVVQKHWARRLHYDFRLELDGVLLSWAVPKGPSFDPAEKRIAIHVE
DHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVGDAQAGMAKGKLEFALHGQKLAGRWELVRISKPGDADDQWMLFKKR
DRWARPHAEFDVITALPDSVVAHPLGQVEERESSSASPSGTPDLSAAVRAPPPPRLAPQLATPTAKLPSGSGWIIETKFD
GYRLLSRIVDARVHLITRNGHDWTRKLGGLAKEVEKLDISEGWLDGEIVVLRDGLPDFNALQNAIDSHRTESIVYFLFDI
PYWEGRDLRRVPLRERRAHLARLVDARSERVRFSESFEAPADQVFQAASQLGLEGVMLKRADSAYSSSRNADWLKAKCRL
RQEFVICGYGDREGAPGEVGRLMLGVYEDGQLRDAGNVGTGWDSKTAAALRTQLAKLKTDTAPFAAASKGRSRWGSNRNS
TPHWVKPSLVAEVEFAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGSTRAAVKVTHPERVIDATTGITKLDLVRY
YESVADWLLPHLMARPVALLRAPDGIGGELFFQKHAETTKLPGLTEQPASLWPGHSRLLTIDSAEALAGAAQLNVVELHT
WNSTAADLAHPDRVIFDLDPGEGVSWQHVQEAAILVHTLLGELGLAAWLKTSGGKGLHVVVPLVPELDYDAVKSFSRAAV
LHLAKTLPQRFVARSGAGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQLPQLKSADQWTVRNAREYLSF
RTNDPWSDYWSTTQSLQDAMEALG

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 91334; Mature: 91203

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTSLDRYREKRDFRVTAEPGPRTRAPRAPGPLRFVVQKHWARRLHYDFRLELDGVLLS
CCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEEE
WAVPKGPSFDPAEKRIAIHVEDHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVGDAQA
EECCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHH
GMAKGKLEFALHGQKLAGRWELVRISKPGDADDQWMLFKKRDRWARPHAEFDVITALPDS
CCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCHH
VVAHPLGQVEERESSSASPSGTPDLSAAVRAPPPPRLAPQLATPTAKLPSGSGWIIETKF
HHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
DGYRLLSRIVDARVHLITRNGHDWTRKLGGLAKEVEKLDISEGWLDGEIVVLRDGLPDFN
CHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHH
ALQNAIDSHRTESIVYFLFDIPYWEGRDLRRVPLRERRAHLARLVDARSERVRFSESFEA
HHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECHHCCCC
PADQVFQAASQLGLEGVMLKRADSAYSSSRNADWLKAKCRLRQEFVICGYGDREGAPGEV
CHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHH
GRLMLGVYEDGQLRDAGNVGTGWDSKTAAALRTQLAKLKTDTAPFAAASKGRSRWGSNRN
CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCC
STPHWVKPSLVAEVEFAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGSTRAAVKV
CCCCEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCEEEEE
THPERVIDATTGITKLDLVRYYESVADWLLPHLMARPVALLRAPDGIGGELFFQKHAETT
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHEEECCCCCC
KLPGLTEQPASLWPGHSRLLTIDSAEALAGAAQLNVVELHTWNSTAADLAHPDRVIFDLD
CCCCCCCCCHHCCCCCCEEEEECCHHHHHCHHEEEEEEEEECCCCHHHCCCCCEEEEECC
PGEGVSWQHVQEAAILVHTLLGELGLAAWLKTSGGKGLHVVVPLVPELDYDAVKSFSRAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
VLHLAKTLPQRFVARSGAGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQ
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHH
LPQLKSADQWTVRNAREYLSFRTNDPWSDYWSTTQSLQDAMEALG
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ARTSLDRYREKRDFRVTAEPGPRTRAPRAPGPLRFVVQKHWARRLHYDFRLELDGVLLS
CCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCEEEE
WAVPKGPSFDPAEKRIAIHVEDHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVGDAQA
EECCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCHHCCCCEEEEECCCCCCCCCCCHH
GMAKGKLEFALHGQKLAGRWELVRISKPGDADDQWMLFKKRDRWARPHAEFDVITALPDS
CCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCHH
VVAHPLGQVEERESSSASPSGTPDLSAAVRAPPPPRLAPQLATPTAKLPSGSGWIIETKF
HHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
DGYRLLSRIVDARVHLITRNGHDWTRKLGGLAKEVEKLDISEGWLDGEIVVLRDGLPDFN
CHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHH
ALQNAIDSHRTESIVYFLFDIPYWEGRDLRRVPLRERRAHLARLVDARSERVRFSESFEA
HHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEECHHCCCC
PADQVFQAASQLGLEGVMLKRADSAYSSSRNADWLKAKCRLRQEFVICGYGDREGAPGEV
CHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHH
GRLMLGVYEDGQLRDAGNVGTGWDSKTAAALRTQLAKLKTDTAPFAAASKGRSRWGSNRN
CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCC
STPHWVKPSLVAEVEFAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGSTRAAVKV
CCCCEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCEEEEE
THPERVIDATTGITKLDLVRYYESVADWLLPHLMARPVALLRAPDGIGGELFFQKHAETT
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHEEECCCCCC
KLPGLTEQPASLWPGHSRLLTIDSAEALAGAAQLNVVELHTWNSTAADLAHPDRVIFDLD
CCCCCCCCCHHCCCCCCEEEEECCHHHHHCHHEEEEEEEEECCCCHHHCCCCCEEEEECC
PGEGVSWQHVQEAAILVHTLLGELGLAAWLKTSGGKGLHVVVPLVPELDYDAVKSFSRAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
VLHLAKTLPQRFVARSGAGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQ
HHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHH
LPQLKSADQWTVRNAREYLSFRTNDPWSDYWSTTQSLQDAMEALG
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]