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The map label for this gene is ygiD [H]

Identifier: 73542923

GI number: 73542923

Start: 3554138

End: 3555025

Strand: Reverse

Name: ygiD [H]

Synonym: Reut_A3239

Alternate gene names: 73542923

Gene position: 3555025-3554138 (Counterclockwise)

Preceding gene: 73542927

Following gene: 73542918

Centisome position: 93.39

GC content: 69.59

Gene sequence:

>888_bases
ATGCTGCCCTCGCTCTACATCTCGCACGGTTCGCCGATGCTGGCCATCGACCCGGGCCCGACCGGCGCCATTTTTGACGC
GCTTGGCGCCAGCCTGCGCGCGCAGAAGCCGCGCGCGGTGCTCGTAGTGTCGGCGCACTGGATCTACAGCACGCTGGCGG
TCGGCACGCGCGAGCGCCAGGAAGCGTGGCACGACTTCGGTGGCTTTCCGCGCGAGCTCTATGCGCTGCGCTATGACGCG
CCGGGCTCGCCCGAGCTTGCGGCGCGGGTCAAGGAACTGGTCGAGGCGGCCCATGTCCCGGGCGCCGGCTTTGTCGGGTT
CGACGAAGAGCGCCCGCTCGACCACGGTGCCTGGATGCCGATGCGCCATTTCTTCCCGGATGCGGACGTTCCTGTGGTGC
AGCTCGCGCTGAATCCCTACCTGTCGCCCGCGACGCAGATCGACATCGGCCGCGCGCTGGCGCCGCTACGTGACGAGGGT
GTGCTGGTGCTTGCCTCGGGCAGCTTCACGCACAACCTGCAGGAAGTGTTCGGCGGCGGCCGGCGTGCCCAACATGGTCC
GGCCACCGAGCCGTATGTCGATGCGTTCCGCAACTGGATGCTCGCTGCGCTCGATGAGGCGCTGGCGACCGGGGACACCA
GCCGCATTGCCGACTATCGCGCCCAGGCTCCGCACGCGCGCCGCGCACATCCGACCGACGAGCACTTGCTGCCGTTCTAT
GTGGCGCTGGGTGCCGCGCTCGGTCCGCGCGATGCCGGAACCGGTCAGGCACCGGCGGAGGTGAAGCGGGTCGCCGACGA
AGTCACTTACGGCGTGCTGGCCATGGATACCTTCGTGTTCAACGGTCTCGCCGCCGGCGCCCAGCCGCCCGCACGAGCAG
CGGCCTGA

Upstream 100 bases:

>100_bases
TTCAAGTTTTTTGCACGAAGTGTCCGCAAATCCGGTCCGCCGCGGGGCGACTTGTTTGTCAAACTTCATTCAGGACACGA
AATGCTTTGAAGGAGATGCC

Downstream 100 bases:

>100_bases
CCCTTATCGCTTGCGCGCTGGCAGGTAGCGCCGTGCCGAGCGGGCGCCCGCCAGCGCGATCCAGCCCATGGTCAGCGCCA
CCACGGCGAGGCCGACACGC

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLPSLYISHGSPMLAIDPGPTGAIFDALGASLRAQKPRAVLVVSAHWIYSTLAVGTRERQEAWHDFGGFPRELYALRYDA
PGSPELAARVKELVEAAHVPGAGFVGFDEERPLDHGAWMPMRHFFPDADVPVVQLALNPYLSPATQIDIGRALAPLRDEG
VLVLASGSFTHNLQEVFGGGRRAQHGPATEPYVDAFRNWMLAALDEALATGDTSRIADYRAQAPHARRAHPTDEHLLPFY
VALGAALGPRDAGTGQAPAEVKRVADEVTYGVLAMDTFVFNGLAAGAQPPARAAA

Sequences:

>Translated_295_residues
MLPSLYISHGSPMLAIDPGPTGAIFDALGASLRAQKPRAVLVVSAHWIYSTLAVGTRERQEAWHDFGGFPRELYALRYDA
PGSPELAARVKELVEAAHVPGAGFVGFDEERPLDHGAWMPMRHFFPDADVPVVQLALNPYLSPATQIDIGRALAPLRDEG
VLVLASGSFTHNLQEVFGGGRRAQHGPATEPYVDAFRNWMLAALDEALATGDTSRIADYRAQAPHARRAHPTDEHLLPFY
VALGAALGPRDAGTGQAPAEVKRVADEVTYGVLAMDTFVFNGLAAGAQPPARAAA
>Mature_295_residues
MLPSLYISHGSPMLAIDPGPTGAIFDALGASLRAQKPRAVLVVSAHWIYSTLAVGTRERQEAWHDFGGFPRELYALRYDA
PGSPELAARVKELVEAAHVPGAGFVGFDEERPLDHGAWMPMRHFFPDADVPVVQLALNPYLSPATQIDIGRALAPLRDEG
VLVLASGSFTHNLQEVFGGGRRAQHGPATEPYVDAFRNWMLAALDEALATGDTSRIADYRAQAPHARRAHPTDEHLLPFY
VALGAALGPRDAGTGQAPAEVKRVADEVTYGVLAMDTFVFNGLAAGAQPPARAAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=247, Percent_Identity=37.246963562753, Blast_Score=138, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 31572; Mature: 31572

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPSLYISHGSPMLAIDPGPTGAIFDALGASLRAQKPRAVLVVSAHWIYSTLAVGTRERQ
CCCCEEEECCCCEEEECCCCCHHHHHHHCHHHHCCCCCEEEEEEHHHHHHHHHHCCHHHH
EAWHDFGGFPRELYALRYDAPGSPELAARVKELVEAAHVPGAGFVGFDEERPLDHGAWMP
HHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
MRHFFPDADVPVVQLALNPYLSPATQIDIGRALAPLRDEGVLVLASGSFTHNLQEVFGGG
HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCC
RRAQHGPATEPYVDAFRNWMLAALDEALATGDTSRIADYRAQAPHARRAHPTDEHLLPFY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
VALGAALGPRDAGTGQAPAEVKRVADEVTYGVLAMDTFVFNGLAAGAQPPARAAA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLPSLYISHGSPMLAIDPGPTGAIFDALGASLRAQKPRAVLVVSAHWIYSTLAVGTRERQ
CCCCEEEECCCCEEEECCCCCHHHHHHHCHHHHCCCCCEEEEEEHHHHHHHHHHCCHHHH
EAWHDFGGFPRELYALRYDAPGSPELAARVKELVEAAHVPGAGFVGFDEERPLDHGAWMP
HHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
MRHFFPDADVPVVQLALNPYLSPATQIDIGRALAPLRDEGVLVLASGSFTHNLQEVFGGG
HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCC
RRAQHGPATEPYVDAFRNWMLAALDEALATGDTSRIADYRAQAPHARRAHPTDEHLLPFY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH
VALGAALGPRDAGTGQAPAEVKRVADEVTYGVLAMDTFVFNGLAAGAQPPARAAA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]