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The map label for this gene is yecS [H]

Identifier: 73542697

GI number: 73542697

Start: 3316620

End: 3317273

Strand: Reverse

Name: yecS [H]

Synonym: Reut_A3013

Alternate gene names: 73542697

Gene position: 3317273-3316620 (Counterclockwise)

Preceding gene: 73542698

Following gene: 73542696

Centisome position: 87.15

GC content: 59.33

Gene sequence:

>654_bases
ATGGATTACGTCTTATCCCTTCTGCCGCCCCTGGCGCAGGGTGCGAAAATCACCCTCACACTATTTTTTATCACGCTGGC
CCTGTCTGTACCGCTCGGCCTGGCGCTGGCGCTTGCCCGCATTTCGAAGTGGCCGCTGCTGAGCAGCCTCGTCAACGGCT
ATATCTGGCTGATGCGCGGTACGCCGCTGATGCTGCAGATGCTGTTCATCTATTTCGCGCTGCCGTTCGTGCCGGTCATT
GGCGTGCGGCTGCCTGATTTTCCTGCGGCGGTGGTGGCGTTCGCGCTGAACTACGCCGCCTATTTCGCGGAAATCTTCCG
TGCGGGCATCAAGTCGGTCGACCGTGGACAGTACGAAGCCAGCAAAGCGCTCGGCATGACCTATTTCCAGACCATGCGCC
GCGTCGTGCTGCCGCAGATGGTCAGCCGCGTATTGCCGCCGGTCAGCAACGAGACCATCACGCTGATCAAGGACACGTCG
CTGATCTACGTGCTGGCGCTCAACGATATTCTTCGCACCGCGCGCGGCATCGTGCAGCGCGATTTCACGACCACGCCGTT
CCTGGTGGCAGCGCTTTTCTACTTGCTGATGACGCTGATCCTGACCTGGTTCTTCCAGAACCTCGAGAAACGCTATGCCA
AACATGATGACTGA

Upstream 100 bases:

>100_bases
TGCCCCATTGGCGCGGCGTCGCGCCTCATCGCGGCCCGCGCGCCGGCAAAGTAGCAGCAGCCAGGCGCCCGGGATCCGAA
CCCCTCCCATCCGCGCAAGC

Downstream 100 bases:

>100_bases
CGCGGCCGGAGCCGATTCCAATCGCGGCGCCAGCGTCATGGTCGCGGCGCGGGACATCGTGAAGGCCTTCGGACCGTTGC
AAGTGCTGCGCGGTGTGTCC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MDYVLSLLPPLAQGAKITLTLFFITLALSVPLGLALALARISKWPLLSSLVNGYIWLMRGTPLMLQMLFIYFALPFVPVI
GVRLPDFPAAVVAFALNYAAYFAEIFRAGIKSVDRGQYEASKALGMTYFQTMRRVVLPQMVSRVLPPVSNETITLIKDTS
LIYVLALNDILRTARGIVQRDFTTTPFLVAALFYLLMTLILTWFFQNLEKRYAKHDD

Sequences:

>Translated_217_residues
MDYVLSLLPPLAQGAKITLTLFFITLALSVPLGLALALARISKWPLLSSLVNGYIWLMRGTPLMLQMLFIYFALPFVPVI
GVRLPDFPAAVVAFALNYAAYFAEIFRAGIKSVDRGQYEASKALGMTYFQTMRRVVLPQMVSRVLPPVSNETITLIKDTS
LIYVLALNDILRTARGIVQRDFTTTPFLVAALFYLLMTLILTWFFQNLEKRYAKHDD
>Mature_217_residues
MDYVLSLLPPLAQGAKITLTLFFITLALSVPLGLALALARISKWPLLSSLVNGYIWLMRGTPLMLQMLFIYFALPFVPVI
GVRLPDFPAAVVAFALNYAAYFAEIFRAGIKSVDRGQYEASKALGMTYFQTMRRVVLPQMVSRVLPPVSNETITLIKDTS
LIYVLALNDILRTARGIVQRDFTTTPFLVAALFYLLMTLILTWFFQNLEKRYAKHDD

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=215, Percent_Identity=40, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=38.0487804878049, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1786873, Length=212, Percent_Identity=35.377358490566, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=31.4285714285714, Blast_Score=103, Evalue=7e-24,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=31.5270935960591, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=31.1320754716981, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787087, Length=231, Percent_Identity=29.4372294372294, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=31.1627906976744, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI48994930, Length=180, Percent_Identity=26.6666666666667, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786874, Length=207, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24463; Mature: 24463

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYVLSLLPPLAQGAKITLTLFFITLALSVPLGLALALARISKWPLLSSLVNGYIWLMRG
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
TPLMLQMLFIYFALPFVPVIGVRLPDFPAAVVAFALNYAAYFAEIFRAGIKSVDRGQYEA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SKALGMTYFQTMRRVVLPQMVSRVLPPVSNETITLIKDTSLIYVLALNDILRTARGIVQR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHC
DFTTTPFLVAALFYLLMTLILTWFFQNLEKRYAKHDD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDYVLSLLPPLAQGAKITLTLFFITLALSVPLGLALALARISKWPLLSSLVNGYIWLMRG
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC
TPLMLQMLFIYFALPFVPVIGVRLPDFPAAVVAFALNYAAYFAEIFRAGIKSVDRGQYEA
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
SKALGMTYFQTMRRVVLPQMVSRVLPPVSNETITLIKDTSLIYVLALNDILRTARGIVQR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHC
DFTTTPFLVAALFYLLMTLILTWFFQNLEKRYAKHDD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]