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The map label for this gene is lpxC [H]

Identifier: 73542656

GI number: 73542656

Start: 3259811

End: 3260728

Strand: Reverse

Name: lpxC [H]

Synonym: Reut_A2972

Alternate gene names: 73542656

Gene position: 3260728-3259811 (Counterclockwise)

Preceding gene: 73542657

Following gene: 73542654

Centisome position: 85.66

GC content: 61.11

Gene sequence:

>918_bases
ATGCTCAAACAGCGCACCATCAAGTCCCTGGTGAAGACGGTCGGCATCGGTCTGCACTCGGGTCGCAAAGTGACGCTGAC
CCTGCGGCCGGCACCGGCCGACACCGGTATCGTCTTTACCCGCGTGGACCTGCCCGAAGCCGTCGAAATCCCCGCCGCTG
CCGGCGCCATAGGCGACACGCGCCTTGCGTCGGTGTTGCAGAAGGATGGTGCGCGTGTGTCGACGGTCGAGCATCTGATG
TCGGCCTGTGCCGGCTTGGGCATCGACAACCTCTATGTCGATGTCGACGCCGAAGAAATCCCGATCATGGACGGCAGCGC
GGCTTCGTTCGTGTTCCTGCTGCAATCGGCTGGCATCGAACAGCAGAATGCCGCCAAGCGTTTCATCCGCGTGAAAAAGG
CCGTGGAAGTGCGCGAGGGCGACAAGCTGGCGCGCCTGGAGCCGTTCTTTGGCTTCAAGCTGTCGTTCACGATTGACTTT
CGTCATCCGGCGGTCGACAAGACTGGCCAGAACTTCGAGATCGATTTCGCCGATACCAGCTACGTGCGTGAAATCGCGCG
TGCGCGGACCTTTGGCTTCGCCCATGAAGTGGAAGCCTTGCGTGAGATGGGACTGGCACGTGGCGGCAGTCTCGACAATG
CGATCGTGCTGGATGAACACCGCATGCTCAACAACGAAGAGCTGCGCTATGGCGATGAGTTCGTGCGCCACAAGATCCTG
GATGCGATCGGTGACCTGTATGTGGTCGGCCATCCGCTGATTGGCGCTTATGTGGCGCACAAGTCGGGTCACGGGTTGAA
CAACCAGTTGCTGCGTGCGTTGCTGGCTGACCAGGAAGCGTATGAGGTAGTGACGTTCGATCGCATGGAGGACGCGCCCG
TCGCGTTCCTGCCGCAGGTGCAGCCGGCGTTTGCCTGA

Upstream 100 bases:

>100_bases
CACACCGAAACAAAGTGTCTTAGCGGGATTTCCCTAGCAGTGGTAAAATCACTTAATCGAATATGAAACCTGATAGGTTT
TAATAATTACTGAGGCCGCC

Downstream 100 bases:

>100_bases
TCGGGGCCGGCACCGAAAACAAAAACCGGCCAGAAGGCCGGTTTTTTGTTTCTGTGGTCCTAGCGATGATGCGACAGCAA
GGTCTTTAGCGCGTCCTGTA

Product: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

Products: NA

Alternate protein names: UDP-3-O-acyl-GlcNAc deacetylase [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLKQRTIKSLVKTVGIGLHSGRKVTLTLRPAPADTGIVFTRVDLPEAVEIPAAAGAIGDTRLASVLQKDGARVSTVEHLM
SACAGLGIDNLYVDVDAEEIPIMDGSAASFVFLLQSAGIEQQNAAKRFIRVKKAVEVREGDKLARLEPFFGFKLSFTIDF
RHPAVDKTGQNFEIDFADTSYVREIARARTFGFAHEVEALREMGLARGGSLDNAIVLDEHRMLNNEELRYGDEFVRHKIL
DAIGDLYVVGHPLIGAYVAHKSGHGLNNQLLRALLADQEAYEVVTFDRMEDAPVAFLPQVQPAFA

Sequences:

>Translated_305_residues
MLKQRTIKSLVKTVGIGLHSGRKVTLTLRPAPADTGIVFTRVDLPEAVEIPAAAGAIGDTRLASVLQKDGARVSTVEHLM
SACAGLGIDNLYVDVDAEEIPIMDGSAASFVFLLQSAGIEQQNAAKRFIRVKKAVEVREGDKLARLEPFFGFKLSFTIDF
RHPAVDKTGQNFEIDFADTSYVREIARARTFGFAHEVEALREMGLARGGSLDNAIVLDEHRMLNNEELRYGDEFVRHKIL
DAIGDLYVVGHPLIGAYVAHKSGHGLNNQLLRALLADQEAYEVVTFDRMEDAPVAFLPQVQPAFA
>Mature_305_residues
MLKQRTIKSLVKTVGIGLHSGRKVTLTLRPAPADTGIVFTRVDLPEAVEIPAAAGAIGDTRLASVLQKDGARVSTVEHLM
SACAGLGIDNLYVDVDAEEIPIMDGSAASFVFLLQSAGIEQQNAAKRFIRVKKAVEVREGDKLARLEPFFGFKLSFTIDF
RHPAVDKTGQNFEIDFADTSYVREIARARTFGFAHEVEALREMGLARGGSLDNAIVLDEHRMLNNEELRYGDEFVRHKIL
DAIGDLYVVGHPLIGAYVAHKSGHGLNNQLLRALLADQEAYEVVTFDRMEDAPVAFLPQVQPAFA

Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]

COG id: COG0774

COG function: function code M; UDP-3-O-acyl-N-acetylglucosamine deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpxC family [H]

Homologues:

Organism=Escherichia coli, GI1786285, Length=297, Percent_Identity=55.5555555555556, Blast_Score=357, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR004463
- InterPro:   IPR011334
- InterPro:   IPR015870 [H]

Pfam domain/function: PF03331 LpxC [H]

EC number: 3.5.1.-

Molecular weight: Translated: 33428; Mature: 33428

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQRTIKSLVKTVGIGLHSGRKVTLTLRPAPADTGIVFTRVDLPEAVEIPAAAGAIGDT
CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHH
RLASVLQKDGARVSTVEHLMSACAGLGIDNLYVDVDAEEIPIMDGSAASFVFLLQSAGIE
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
QQNAAKRFIRVKKAVEVREGDKLARLEPFFGFKLSFTIDFRHPAVDKTGQNFEIDFADTS
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEECCHH
YVREIARARTFGFAHEVEALREMGLARGGSLDNAIVLDEHRMLNNEELRYGDEFVRHKIL
HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHH
DAIGDLYVVGHPLIGAYVAHKSGHGLNNQLLRALLADQEAYEVVTFDRMEDAPVAFLPQV
HHHCCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCEEECCCC
QPAFA
CCCCC
>Mature Secondary Structure
MLKQRTIKSLVKTVGIGLHSGRKVTLTLRPAPADTGIVFTRVDLPEAVEIPAAAGAIGDT
CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCHHCCCCCCCCCCHH
RLASVLQKDGARVSTVEHLMSACAGLGIDNLYVDVDAEEIPIMDGSAASFVFLLQSAGIE
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
QQNAAKRFIRVKKAVEVREGDKLARLEPFFGFKLSFTIDFRHPAVDKTGQNFEIDFADTS
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEECCHH
YVREIARARTFGFAHEVEALREMGLARGGSLDNAIVLDEHRMLNNEELRYGDEFVRHKIL
HHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHHH
DAIGDLYVVGHPLIGAYVAHKSGHGLNNQLLRALLADQEAYEVVTFDRMEDAPVAFLPQV
HHHCCEEEECCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHEEEEECCCCCCCEEECCCC
QPAFA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA