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The map label for this gene is yfdE [H]

Identifier: 73542592

GI number: 73542592

Start: 3183656

End: 3184891

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_A2908

Alternate gene names: 73542592

Gene position: 3184891-3183656 (Counterclockwise)

Preceding gene: 73542593

Following gene: 73542591

Centisome position: 83.67

GC content: 65.29

Gene sequence:

>1236_bases
ATGACAGATTTCAGCGATACCCGCGTTCAGGACTCCGCTCGCCCCTTGCCGCTGGCCGGCGTGCGCGTGCTCGACGTCAG
CCAGGTCATGGCCGGCCCCTACGCGTGCATGCTGCTGGCCGACCTTGGCGCCGACGTGATCAAGATCGAACCGCCAGAGG
GCGGCGACCAGACGCGCGGCTCGATGGGCTTCAAGATGAAGGGCCCGGACAGCATGGGCTTCCTCAACATGAACCGCAAC
AAGCGCAGCGTCACGCTGGACCTGAAGACGGAATCGGGGCGCGAGGTGCTGTACCGGCTGGCGGAAACCGCCGACATCCT
CGTCGAGAATTACCGGCCGGGCGTGATGAAACGCCTCGGCATCGATTACGAGACGCTTAGCAAGATCAATCCGAAGCTCG
TCTACTGCAGCATCTCCGGCTTCGGGCAGAGCGGCCCGTGGGCCACGCGGCCCGGCTTCGACCTGATGGCGCAGGCCATG
TCGGGCGTCATGAGCGTGACCGGCTACCCGGGCGGCGCGCCCGTGAAGGCCGGTGTGCCGGTGGCCGACATTGGCTGCGC
GCTGTTTGCCACTTACGGCATGCTGTCCGCGTACATCGGGGCCAAGGCGACAGGAAAAGGGCAGTACGTCGATGCTTCGC
TGTTCGATTCCGCACTGGCCTTTTCGGTGTGGGACACGTGCGAATACTGGGGCACGGGCCGCGAACCCGAGCCGCTGGGC
ACGGCCAACCGCATGAGCGCGCCGTACCAGGCCATGAAAGCCGCCGATGGCTACTTCGTGATGGGCGCCACCAACCAGAA
GCTGTGGCAGTTGCTGTGCAAGACCATCGACCGGCCCGACCTCCTCGCGGACGAGCGCTTTGCGACCGTGGCGCTGCGGC
TGAATAACCGCAAAGCGCTGATTTGCGCGCTGGAGGAAAGCTTCGCGCAGCAGGGCTGCGACTACTGGATTGAGCACCTG
CTCGAAGTCGGTATCCCGGCCGGGCCGATCCTGACGTATCCGCAGGCGTTCGACAGCGAGCACGGCAAGCACCGCCAGAT
GCGTATCGAGATCGATCACCCGATCGAAGGCAAGGTGCCCAATATCGGCTTCGCCGTGAAGATGGGCGGCACGCCGCAGC
AGGTCCGGCGTCCGCCGCCGTTGCTGGGTCAGCATACGGAGGAAGTCCTGGCGGAGCTTGGCCTTTCGAAGGATCAACAG
CAGTCGCTGGCGGCAGCCGGCGCGTTTGGCGCATGA

Upstream 100 bases:

>100_bases
CCAAGGTCGTGAAGGACGCTGGCGTGAAGGCCGAGGCCTGATGGCCGGTCGCCGCCGCACCGACGCACGCCACTCTATTC
CTCTATCCAGGAAGTACCCG

Downstream 100 bases:

>100_bases
GCACCGCACGGTCTCCGGAAGGCGACGTCCCTGCCGAGGGGCGCGTCACGCTGACAATGCAGGGACCAGTCGCGACCCTG
ACATTCGACCGCCCCGCGGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTDFSDTRVQDSARPLPLAGVRVLDVSQVMAGPYACMLLADLGADVIKIEPPEGGDQTRGSMGFKMKGPDSMGFLNMNRN
KRSVTLDLKTESGREVLYRLAETADILVENYRPGVMKRLGIDYETLSKINPKLVYCSISGFGQSGPWATRPGFDLMAQAM
SGVMSVTGYPGGAPVKAGVPVADIGCALFATYGMLSAYIGAKATGKGQYVDASLFDSALAFSVWDTCEYWGTGREPEPLG
TANRMSAPYQAMKAADGYFVMGATNQKLWQLLCKTIDRPDLLADERFATVALRLNNRKALICALEESFAQQGCDYWIEHL
LEVGIPAGPILTYPQAFDSEHGKHRQMRIEIDHPIEGKVPNIGFAVKMGGTPQQVRRPPPLLGQHTEEVLAELGLSKDQQ
QSLAAAGAFGA

Sequences:

>Translated_411_residues
MTDFSDTRVQDSARPLPLAGVRVLDVSQVMAGPYACMLLADLGADVIKIEPPEGGDQTRGSMGFKMKGPDSMGFLNMNRN
KRSVTLDLKTESGREVLYRLAETADILVENYRPGVMKRLGIDYETLSKINPKLVYCSISGFGQSGPWATRPGFDLMAQAM
SGVMSVTGYPGGAPVKAGVPVADIGCALFATYGMLSAYIGAKATGKGQYVDASLFDSALAFSVWDTCEYWGTGREPEPLG
TANRMSAPYQAMKAADGYFVMGATNQKLWQLLCKTIDRPDLLADERFATVALRLNNRKALICALEESFAQQGCDYWIEHL
LEVGIPAGPILTYPQAFDSEHGKHRQMRIEIDHPIEGKVPNIGFAVKMGGTPQQVRRPPPLLGQHTEEVLAELGLSKDQQ
QSLAAAGAFGA
>Mature_410_residues
TDFSDTRVQDSARPLPLAGVRVLDVSQVMAGPYACMLLADLGADVIKIEPPEGGDQTRGSMGFKMKGPDSMGFLNMNRNK
RSVTLDLKTESGREVLYRLAETADILVENYRPGVMKRLGIDYETLSKINPKLVYCSISGFGQSGPWATRPGFDLMAQAMS
GVMSVTGYPGGAPVKAGVPVADIGCALFATYGMLSAYIGAKATGKGQYVDASLFDSALAFSVWDTCEYWGTGREPEPLGT
ANRMSAPYQAMKAADGYFVMGATNQKLWQLLCKTIDRPDLLADERFATVALRLNNRKALICALEESFAQQGCDYWIEHLL
EVGIPAGPILTYPQAFDSEHGKHRQMRIEIDHPIEGKVPNIGFAVKMGGTPQQVRRPPPLLGQHTEEVLAELGLSKDQQQ
SLAAAGAFGA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=377, Percent_Identity=39.2572944297082, Blast_Score=294, Evalue=1e-79,
Organism=Homo sapiens, GI300863124, Length=403, Percent_Identity=37.2208436724566, Blast_Score=282, Evalue=3e-76,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=35.5437665782493, Blast_Score=245, Evalue=5e-65,
Organism=Homo sapiens, GI13376042, Length=403, Percent_Identity=33.9950372208437, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=29.9492385786802, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=29.9492385786802, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI266458393, Length=281, Percent_Identity=33.4519572953737, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI266458397, Length=267, Percent_Identity=34.0823970037453, Blast_Score=128, Evalue=8e-30,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=37.1621621621622, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI42822893, Length=148, Percent_Identity=37.1621621621622, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI87082093, Length=378, Percent_Identity=34.9206349206349, Blast_Score=250, Evalue=1e-67,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=29.3827160493827, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1786222, Length=415, Percent_Identity=28.433734939759, Blast_Score=111, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=305, Percent_Identity=28.5245901639344, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=25.9587020648968, Blast_Score=95, Evalue=7e-20,
Organism=Drosophila melanogaster, GI24648431, Length=378, Percent_Identity=38.6243386243386, Blast_Score=280, Evalue=2e-75,
Organism=Drosophila melanogaster, GI24585488, Length=337, Percent_Identity=28.1899109792285, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44485; Mature: 44353

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFSDTRVQDSARPLPLAGVRVLDVSQVMAGPYACMLLADLGADVIKIEPPEGGDQTRG
CCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCCCCC
SMGFKMKGPDSMGFLNMNRNKRSVTLDLKTESGREVLYRLAETADILVENYRPGVMKRLG
CCCEEECCCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHC
IDYETLSKINPKLVYCSISGFGQSGPWATRPGFDLMAQAMSGVMSVTGYPGGAPVKAGVP
CCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCC
VADIGCALFATYGMLSAYIGAKATGKGQYVDASLFDSALAFSVWDTCEYWGTGREPEPLG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TANRMSAPYQAMKAADGYFVMGATNQKLWQLLCKTIDRPDLLADERFATVALRLNNRKAL
CCHHCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEE
ICALEESFAQQGCDYWIEHLLEVGIPAGPILTYPQAFDSEHGKHRQMRIEIDHPIEGKVP
EEEEHHHHHHCCHHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCEEEEEEECCCCCCCCC
NIGFAVKMGGTPQQVRRPPPLLGQHTEEVLAELGLSKDQQQSLAAAGAFGA
CCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDFSDTRVQDSARPLPLAGVRVLDVSQVMAGPYACMLLADLGADVIKIEPPEGGDQTRG
CCCCCCCCCCCCCCCCCCCEEEEEHHHHHHCHHHHHHHHHCCCCEEEEECCCCCCCCCC
SMGFKMKGPDSMGFLNMNRNKRSVTLDLKTESGREVLYRLAETADILVENYRPGVMKRLG
CCCEEECCCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHC
IDYETLSKINPKLVYCSISGFGQSGPWATRPGFDLMAQAMSGVMSVTGYPGGAPVKAGVP
CCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCCCCCC
VADIGCALFATYGMLSAYIGAKATGKGQYVDASLFDSALAFSVWDTCEYWGTGREPEPLG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TANRMSAPYQAMKAADGYFVMGATNQKLWQLLCKTIDRPDLLADERFATVALRLNNRKAL
CCHHCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCEEE
ICALEESFAQQGCDYWIEHLLEVGIPAGPILTYPQAFDSEHGKHRQMRIEIDHPIEGKVP
EEEEHHHHHHCCHHHHHHHHHHHCCCCCCCEECCHHHCCCCCCCEEEEEEECCCCCCCCC
NIGFAVKMGGTPQQVRRPPPLLGQHTEEVLAELGLSKDQQQSLAAAGAFGA
CCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]