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The map label for this gene is yjiR [H]

Identifier: 73542146

GI number: 73542146

Start: 2701276

End: 2702712

Strand: Direct

Name: yjiR [H]

Synonym: Reut_A2460

Alternate gene names: 73542146

Gene position: 2701276-2702712 (Clockwise)

Preceding gene: 73542144

Following gene: 73542148

Centisome position: 70.96

GC content: 68.96

Gene sequence:

>1437_bases
ATGGACTCCGCCCCGCTCTACCAGCAACTCGCCGACCAGTACCGCCACGCCATTCGCGCCGGCACGCTGGCGCCGGGGCA
TCGCATGCCGTCCGTGCGTGCGCTCATGTCTACCCATGACGTAAGCCTGTCGACCGCGCTGCAGGCGTGCCGGCTGCTCG
AAAGCGACGGCCTGCTCGAAGCCCGGCCTCGCTCGGGCTATTTCGTGCGGACGACTACGCCGCTGCGCCTGGCGCCCATC
ACCGAACCGGCGCCCACGCTGCCCGATCCGGCGCAGTACATCGGCATGCACCAGCGGATCTCGTCCGTACTCGCGCGCAG
CCAGCAGGATCCGTCGACCTTCAGCCTCGGCGGCGCCCGCGGCGCGCCGGCGCTCTATCCGCTTGCCGCACTCCAGCAAG
CGGCCGGACGCATCCTGCGGCGCGATCCCACGCTCTTCGGCGAAGCCGCCGCCCCAGGCGGCCACCCAGCATTGCGCGCC
GCATTGGCGCGGCTGGCGCTGCGGCACCGCTTCACCCTGTCGCCCGATGAAGTGCTGATCACGCACGGCTGTACCGAGGC
CTTGCAACTGGCGCTGCGTGCCGTCGCCGGTCCCGGCGATGTGATCGCCGTGGAATCTCCGACCTATTACGGCCTGCTCC
AGATCCTGGAAAGCCTGGGCATGCGCGCGCTGGAGATTCCGTGCAGCGCGCAGACCGGACTCTCGCTGGAAGCGCTGGAA
CTGGCCGTGCGCACCTACGACAACATCCGCGCCGTGGTCGCCATGCCGAATTTGCAGAACCCGCTAGGCTCGATCATGCC
GGACGCGCACAAGAGCCGGCTCGTGCAATGGTGCGAGGATCACGGCGTGCCGCTGATCGAGGACGACTGCCTGTCCGGCA
CCGCCGACTTCGACACGCCGCTGGCCGCGGCGAAAGCATGGGACCGCACCGGCAACGTGATCTACTGTTCGTCCGTTCAC
AAGACCCTGGCACCCGGCGTGCGGCTGGGCTGGATCGCCGGCGGCAAATGGCATGCGCGCGTGGAGATGCTGAAGTTCGC
GCTGTCGCGTCCCAACGAAATGCTGTCGCAGGCGGCGGTCGCCGAGTTCATGGCCGCTGGCGGCTATGAGCGGCACCTGC
GGCGCTTGCGCGTGGCCCTGCGCCAGCAGCGCGAATGGACAGCGCAGGTGATCGCGGCGAGCTTCCCCACCGGCACCCGG
CTGACGCTGCCGCGCGGCGGCTTTCACCTGTGGGTAGAGCTGCCGCCAGGCGTAGCGTCGGAAGCCGTGTTCGAGCACGC
ACTGCGGGAGGGCGTCTACGTCGCTCCGGGCCTGATGTTCTCCAATTCCCCGCGCTGCGACGGCTTTATCCGCATCAATT
GCGGCACGCCGCGTTCCGCACAAGTCGAGCACGCGCTCGCTACCCTGGCTGCAGTGGTTCATCGGCTGGCGGCATAG

Upstream 100 bases:

>100_bases
GCCGCGGACCGGAACAGTGCAGATTTTTTCTGTCTGTTACGATGCAGATGCCTGCCGTCTGTATCTGTTCACGCGCCCGC
CCGCCGGGCGATCATGCCGC

Downstream 100 bases:

>100_bases
TCGGTGCGTCGGAATCTCACGAGACCCTGATGCAGGACAAGTCGGTCTGGCGGGCAAGCCGATACCATCGCGTGATCCCC
TTCCCGGCTTGACCAGGCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MDSAPLYQQLADQYRHAIRAGTLAPGHRMPSVRALMSTHDVSLSTALQACRLLESDGLLEARPRSGYFVRTTTPLRLAPI
TEPAPTLPDPAQYIGMHQRISSVLARSQQDPSTFSLGGARGAPALYPLAALQQAAGRILRRDPTLFGEAAAPGGHPALRA
ALARLALRHRFTLSPDEVLITHGCTEALQLALRAVAGPGDVIAVESPTYYGLLQILESLGMRALEIPCSAQTGLSLEALE
LAVRTYDNIRAVVAMPNLQNPLGSIMPDAHKSRLVQWCEDHGVPLIEDDCLSGTADFDTPLAAAKAWDRTGNVIYCSSVH
KTLAPGVRLGWIAGGKWHARVEMLKFALSRPNEMLSQAAVAEFMAAGGYERHLRRLRVALRQQREWTAQVIAASFPTGTR
LTLPRGGFHLWVELPPGVASEAVFEHALREGVYVAPGLMFSNSPRCDGFIRINCGTPRSAQVEHALATLAAVVHRLAA

Sequences:

>Translated_478_residues
MDSAPLYQQLADQYRHAIRAGTLAPGHRMPSVRALMSTHDVSLSTALQACRLLESDGLLEARPRSGYFVRTTTPLRLAPI
TEPAPTLPDPAQYIGMHQRISSVLARSQQDPSTFSLGGARGAPALYPLAALQQAAGRILRRDPTLFGEAAAPGGHPALRA
ALARLALRHRFTLSPDEVLITHGCTEALQLALRAVAGPGDVIAVESPTYYGLLQILESLGMRALEIPCSAQTGLSLEALE
LAVRTYDNIRAVVAMPNLQNPLGSIMPDAHKSRLVQWCEDHGVPLIEDDCLSGTADFDTPLAAAKAWDRTGNVIYCSSVH
KTLAPGVRLGWIAGGKWHARVEMLKFALSRPNEMLSQAAVAEFMAAGGYERHLRRLRVALRQQREWTAQVIAASFPTGTR
LTLPRGGFHLWVELPPGVASEAVFEHALREGVYVAPGLMFSNSPRCDGFIRINCGTPRSAQVEHALATLAAVVHRLAA
>Mature_478_residues
MDSAPLYQQLADQYRHAIRAGTLAPGHRMPSVRALMSTHDVSLSTALQACRLLESDGLLEARPRSGYFVRTTTPLRLAPI
TEPAPTLPDPAQYIGMHQRISSVLARSQQDPSTFSLGGARGAPALYPLAALQQAAGRILRRDPTLFGEAAAPGGHPALRA
ALARLALRHRFTLSPDEVLITHGCTEALQLALRAVAGPGDVIAVESPTYYGLLQILESLGMRALEIPCSAQTGLSLEALE
LAVRTYDNIRAVVAMPNLQNPLGSIMPDAHKSRLVQWCEDHGVPLIEDDCLSGTADFDTPLAAAKAWDRTGNVIYCSSVH
KTLAPGVRLGWIAGGKWHARVEMLKFALSRPNEMLSQAAVAEFMAAGGYERHLRRLRVALRQQREWTAQVIAASFPTGTR
LTLPRGGFHLWVELPPGVASEAVFEHALREGVYVAPGLMFSNSPRCDGFIRINCGTPRSAQVEHALATLAAVVHRLAA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=412, Percent_Identity=22.3300970873786, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI33469970, Length=412, Percent_Identity=22.3300970873786, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1790797, Length=476, Percent_Identity=36.7647058823529, Blast_Score=283, Evalue=3e-77,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=35.4564755838641, Blast_Score=265, Evalue=4e-72,
Organism=Drosophila melanogaster, GI18859735, Length=299, Percent_Identity=25.4180602006689, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51623; Mature: 51623

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS50949 HTH_GNTR ; PS01121 CASPASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAPLYQQLADQYRHAIRAGTLAPGHRMPSVRALMSTHDVSLSTALQACRLLESDGLLE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
ARPRSGYFVRTTTPLRLAPITEPAPTLPDPAQYIGMHQRISSVLARSQQDPSTFSLGGAR
ECCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
GAPALYPLAALQQAAGRILRRDPTLFGEAAAPGGHPALRAALARLALRHRFTLSPDEVLI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
THGCTEALQLALRAVAGPGDVIAVESPTYYGLLQILESLGMRALEIPCSAQTGLSLEALE
ECCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHH
LAVRTYDNIRAVVAMPNLQNPLGSIMPDAHKSRLVQWCEDHGVPLIEDDCLSGTADFDTP
HHHHHHCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCH
LAAAKAWDRTGNVIYCSSVHKTLAPGVRLGWIAGGKWHARVEMLKFALSRPNEMLSQAAV
HHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
AEFMAAGGYERHLRRLRVALRQQREWTAQVIAASFPTGTRLTLPRGGFHLWVELPPGVAS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCHH
EAVFEHALREGVYVAPGLMFSNSPRCDGFIRINCGTPRSAQVEHALATLAAVVHRLAA
HHHHHHHHHCCCEECCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDSAPLYQQLADQYRHAIRAGTLAPGHRMPSVRALMSTHDVSLSTALQACRLLESDGLLE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEE
ARPRSGYFVRTTTPLRLAPITEPAPTLPDPAQYIGMHQRISSVLARSQQDPSTFSLGGAR
ECCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
GAPALYPLAALQQAAGRILRRDPTLFGEAAAPGGHPALRAALARLALRHRFTLSPDEVLI
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE
THGCTEALQLALRAVAGPGDVIAVESPTYYGLLQILESLGMRALEIPCSAQTGLSLEALE
ECCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHH
LAVRTYDNIRAVVAMPNLQNPLGSIMPDAHKSRLVQWCEDHGVPLIEDDCLSGTADFDTP
HHHHHHCCCEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCH
LAAAKAWDRTGNVIYCSSVHKTLAPGVRLGWIAGGKWHARVEMLKFALSRPNEMLSQAAV
HHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHH
AEFMAAGGYERHLRRLRVALRQQREWTAQVIAASFPTGTRLTLPRGGFHLWVELPPGVAS
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCHH
EAVFEHALREGVYVAPGLMFSNSPRCDGFIRINCGTPRSAQVEHALATLAAVVHRLAA
HHHHHHHHHCCCEECCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]