Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 73541740

GI number: 73541740

Start: 2254083

End: 2255399

Strand: Reverse

Name: ugpB [H]

Synonym: Reut_A2052

Alternate gene names: 73541740

Gene position: 2255399-2254083 (Counterclockwise)

Preceding gene: 73541742

Following gene: 73541739

Centisome position: 59.25

GC content: 61.73

Gene sequence:

>1317_bases
ATGTCCTTTTCCCATAGTGTGCTGAAGATCGCCGTGCTGGCCGCCCTTACCGGGGCGGGCAGCGCCCAGGCAGCGGTCGA
GATCCAGTGGTGGCATTCGATGGAAGGCGCCTTGAATGACAAGGTGAATGCCATTGCCAACCAGTTCAATGCCAGCCAGT
CCGACTACAAGATCGTGCCCGTCTACAAGGGTCAGTATGACGAGTCGCTGGCGGCGGGTATTGCGGCGTTCCGGTCTGGC
AATGCGCCGGCCATTCTGCAGGTATTCGAAGTCGGCACGGCCACCATGATGAATGCCAAGGGCGCCATCAAGCCCGTGGC
CACGGTCATGAAGGAGGCGGGCGAAAAGTTTGATCCGAAGGCGTACATTCCGGCGGTGGCGGGCTACTACACGTCGAACA
AGGGCGAGATGCTGTCGTTCCCGTTCAACAGTTCGACCACGGTGATGTACTACAACAAGGATGCGTTCAAGAAAGCGGGG
CTGGACCCCAACAAGCCGCCTGCAACCTGGCAGGAAGTGGCGACCGACTCAGCCAAGCTGAAGGCGGCCGGCGTTTCGTG
CGGCTACACCACTGACTGGCAGTCCTGGGTGCACCTGGAGAGTTTCTCTGCCTGGCACAACGTCCTCTTCGCGACGGAAA
ACAATGGCTTCGGCGGACCGGGCGCGCGCCTGGTGTTCAACTCGCCGCTGCATGTCAAGCACATCGCCAACCTGCTGGAC
ATGTCGCAGAAGGGCTATTTCGTCTACGGCGGCCGCAAGGATGAGCCGAAGGCCAAGTTCATTGCCGGCCAGTGCGCGAT
GCTGACGGGCTCGTCGGCAGCGCTTGCCAATATTCGCAAGAACGCCAAGTTCGACTTCACAGTGGCGCCGTTGCCGTACG
AGCAGGGCGTGCCGGGTGCCCCGCAGAATACGATCATCGGCGGCGCATCGTTGTGGGTCATGAGTGGCCGCAAGCCGGAC
GAGTACAAGGGCGTGGCCAAGTTCTTCTCGTATCTGTCGCGCCCCGATGTCCAGGCCGACTGGCACCAGTCGACGGGCTA
TCTGCCCGTGACGGTGGCCGCCTACGAGCTCACCAAGAAGTCGGGCTACTACGACAAGAACCCGGGCGCGGACGTGGCGG
TCAAGCAGATGATCGTCAAGACCACGGATAAGTCGCGGGGCATTCGCCTTGGCAACTTCCCGCAGATCCGCAGTGTGATC
GACGAAGAGCTCGAGGCAGTCTGGTCGGGCAAGAAGCAACCCAAGGAGGCGCTCGATGCCGCCGTGGCGCGCGGCAACGA
ACTGCTGGAGCGGTTCCAGAAGACCGTGCGCGAGTAA

Upstream 100 bases:

>100_bases
CGCCCGGGGTGCGACAGGCGTAACATGCCGGTGTCATAAAAAGCACATAAATTCGCTTGTTTCCCGATGCAGCGAACAAC
TTGACCAGGAGAGACCACCC

Downstream 100 bases:

>100_bases
GCTTCGCCAGTTCTGTAGCGGGGCCGGGACGGCCGCAAGTGCGGGCGTCCTGCCTCTGCATGGTATTCATGCAAGGCGGC
CGCCTGGCCGTCGCGGCGCG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MSFSHSVLKIAVLAALTGAGSAQAAVEIQWWHSMEGALNDKVNAIANQFNASQSDYKIVPVYKGQYDESLAAGIAAFRSG
NAPAILQVFEVGTATMMNAKGAIKPVATVMKEAGEKFDPKAYIPAVAGYYTSNKGEMLSFPFNSSTTVMYYNKDAFKKAG
LDPNKPPATWQEVATDSAKLKAAGVSCGYTTDWQSWVHLESFSAWHNVLFATENNGFGGPGARLVFNSPLHVKHIANLLD
MSQKGYFVYGGRKDEPKAKFIAGQCAMLTGSSAALANIRKNAKFDFTVAPLPYEQGVPGAPQNTIIGGASLWVMSGRKPD
EYKGVAKFFSYLSRPDVQADWHQSTGYLPVTVAAYELTKKSGYYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVI
DEELEAVWSGKKQPKEALDAAVARGNELLERFQKTVRE

Sequences:

>Translated_438_residues
MSFSHSVLKIAVLAALTGAGSAQAAVEIQWWHSMEGALNDKVNAIANQFNASQSDYKIVPVYKGQYDESLAAGIAAFRSG
NAPAILQVFEVGTATMMNAKGAIKPVATVMKEAGEKFDPKAYIPAVAGYYTSNKGEMLSFPFNSSTTVMYYNKDAFKKAG
LDPNKPPATWQEVATDSAKLKAAGVSCGYTTDWQSWVHLESFSAWHNVLFATENNGFGGPGARLVFNSPLHVKHIANLLD
MSQKGYFVYGGRKDEPKAKFIAGQCAMLTGSSAALANIRKNAKFDFTVAPLPYEQGVPGAPQNTIIGGASLWVMSGRKPD
EYKGVAKFFSYLSRPDVQADWHQSTGYLPVTVAAYELTKKSGYYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVI
DEELEAVWSGKKQPKEALDAAVARGNELLERFQKTVRE
>Mature_437_residues
SFSHSVLKIAVLAALTGAGSAQAAVEIQWWHSMEGALNDKVNAIANQFNASQSDYKIVPVYKGQYDESLAAGIAAFRSGN
APAILQVFEVGTATMMNAKGAIKPVATVMKEAGEKFDPKAYIPAVAGYYTSNKGEMLSFPFNSSTTVMYYNKDAFKKAGL
DPNKPPATWQEVATDSAKLKAAGVSCGYTTDWQSWVHLESFSAWHNVLFATENNGFGGPGARLVFNSPLHVKHIANLLDM
SQKGYFVYGGRKDEPKAKFIAGQCAMLTGSSAALANIRKNAKFDFTVAPLPYEQGVPGAPQNTIIGGASLWVMSGRKPDE
YKGVAKFFSYLSRPDVQADWHQSTGYLPVTVAAYELTKKSGYYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVID
EELEAVWSGKKQPKEALDAAVARGNELLERFQKTVRE

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=420, Percent_Identity=59.5238095238095, Blast_Score=528, Evalue=1e-151,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47588; Mature: 47457

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSHSVLKIAVLAALTGAGSAQAAVEIQWWHSMEGALNDKVNAIANQFNASQSDYKIVP
CCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
VYKGQYDESLAAGIAAFRSGNAPAILQVFEVGTATMMNAKGAIKPVATVMKEAGEKFDPK
EECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHEECCCCCHHHHHHHHHHCCCCCCCC
AYIPAVAGYYTSNKGEMLSFPFNSSTTVMYYNKDAFKKAGLDPNKPPATWQEVATDSAKL
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHCCCCCE
KAAGVSCGYTTDWQSWVHLESFSAWHNVLFATENNGFGGPGARLVFNSPLHVKHIANLLD
EEECCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
MSQKGYFVYGGRKDEPKAKFIAGQCAMLTGSSAALANIRKNAKFDFTVAPLPYEQGVPGA
HCCCCEEEECCCCCCCCHHEEECEEEEEECCHHHHHHHHCCCCEEEEECCCCHHCCCCCC
PQNTIIGGASLWVMSGRKPDEYKGVAKFFSYLSRPDVQADWHQSTGYLPVTVAAYELTKK
CCCCEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHC
SGYYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVIDEELEAVWSGKKQPKEALDA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVARGNELLERFQKTVRE
HHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SFSHSVLKIAVLAALTGAGSAQAAVEIQWWHSMEGALNDKVNAIANQFNASQSDYKIVP
CCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
VYKGQYDESLAAGIAAFRSGNAPAILQVFEVGTATMMNAKGAIKPVATVMKEAGEKFDPK
EECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHEECCCCCHHHHHHHHHHCCCCCCCC
AYIPAVAGYYTSNKGEMLSFPFNSSTTVMYYNKDAFKKAGLDPNKPPATWQEVATDSAKL
CCCCHHHCEEECCCCCEEEECCCCCCEEEEECCHHHHHCCCCCCCCCCCHHHHHCCCCCE
KAAGVSCGYTTDWQSWVHLESFSAWHNVLFATENNGFGGPGARLVFNSPLHVKHIANLLD
EEECCCCCCCCCHHHHHHHHHHHHHCEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
MSQKGYFVYGGRKDEPKAKFIAGQCAMLTGSSAALANIRKNAKFDFTVAPLPYEQGVPGA
HCCCCEEEECCCCCCCCHHEEECEEEEEECCHHHHHHHHCCCCEEEEECCCCHHCCCCCC
PQNTIIGGASLWVMSGRKPDEYKGVAKFFSYLSRPDVQADWHQSTGYLPVTVAAYELTKK
CCCCEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEHHHC
SGYYDKNPGADVAVKQMIVKTTDKSRGIRLGNFPQIRSVIDEELEAVWSGKKQPKEALDA
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
AVARGNELLERFQKTVRE
HHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA