Click here to switch to the map view.

The map label for this gene is scpB [H]

Identifier: 73541720

GI number: 73541720

Start: 2231748

End: 2232683

Strand: Reverse

Name: scpB [H]

Synonym: Reut_A2032

Alternate gene names: 73541720

Gene position: 2232683-2231748 (Counterclockwise)

Preceding gene: 73541721

Following gene: 73541719

Centisome position: 58.65

GC content: 66.45

Gene sequence:

>936_bases
ATGTCCAGGGCTCCGGGTTCGTCCGGGAGCAGGTGCAAAGACAGGCTGCACACCCACATGAATACCCAAGAGGCGAAAAT
CGTCCTCGAGACCGCGCTGATCTGTGCGCAGGAACCCCTGCGCGTAGGCGATCTGCGCCGGCTGTTCGCCGAAGATGTCG
GTGCGGATACCATCCGGGTCCTGCTCGATGAACTGCGCCAGGACTGGCGCCAGCGCGGGGTCGAGCTGGTGGCGCTGGCC
AGTGGCTGGCGCTTCCAGAGCCGCCCCGAGATGCGCGAGTACCTGGACCGGCTCAATCCTGAGAAGCCACCCAAGTATTC
GCGGGCCGTCATGGAAACGCTGGCGATCATTGCGTACCGACAGCCGGTGACGCGCGGCGATATCGAGGAAATCCGTGGCG
TGACGGTCAGCACGGAAGTGATCAAGAAGCTGGAAGACCGTAGCTGGATCGAAGTGATCGGCCACCGCGATGTGCCCGGC
CGGCCGGCGCTGTATGCAACGACCAAGGCGTTCCTGGACGATCTCGGGCTGCGCACGCTCGATGAGCTGCCTCCTCTCGA
AGACGCCCAGGCGCAGGCCCAGGCGACGCTGCTTGACCAGCAGGCAATAGATTTTGAAGAGCTGGCCACGGCGCAGCCGG
TGGTCGGCGACGAAGAGGCCTTCCCCGAATCGGGGGCAACGCCGCCGGCAGGCGAGGTGGCTGAAGTCGCCGAAGCCGCC
CCGGTTGCCGATGAGTCGCCGGCCGAGGCGGCCGACGCTGTCGCACAAGCCTCCGCCGATGCCATGCACGTGGCAGACCT
CGCGTCTGCCGTTTCCGAGGCAAACGGCTTCCATGCCGAAGACGCGCCGGGCGATCAGGACGGCGGCAATCCATCCGGCG
ACGACGACGCTGCGCCGCCGCACGCGAACGAGCACGATGAGCGCGTGCCCAACTGA

Upstream 100 bases:

>100_bases
CAAATCGATGCAAAAAGAAGGTGCACGACCTTGAGGCGAAAGCGCTTCCAGGTTTGCTGCGCGACGAGATGGTGGTGGCA
TTCGCACCGCTGAATCCACA

Downstream 100 bases:

>100_bases
ACAATATGCAACATCCGATAGTGAATACTTTGTCTGACTCCGCTGAACAAGACACCCGGGCCGCCGGGGCACCGGCCGCC
GATGGCGCTGCAGAATCCGG

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSRAPGSSGSRCKDRLHTHMNTQEAKIVLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALA
SGWRFQSRPEMREYLDRLNPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLEDRSWIEVIGHRDVPG
RPALYATTKAFLDDLGLRTLDELPPLEDAQAQAQATLLDQQAIDFEELATAQPVVGDEEAFPESGATPPAGEVAEVAEAA
PVADESPAEAADAVAQASADAMHVADLASAVSEANGFHAEDAPGDQDGGNPSGDDDAAPPHANEHDERVPN

Sequences:

>Translated_311_residues
MSRAPGSSGSRCKDRLHTHMNTQEAKIVLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALA
SGWRFQSRPEMREYLDRLNPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLEDRSWIEVIGHRDVPG
RPALYATTKAFLDDLGLRTLDELPPLEDAQAQAQATLLDQQAIDFEELATAQPVVGDEEAFPESGATPPAGEVAEVAEAA
PVADESPAEAADAVAQASADAMHVADLASAVSEANGFHAEDAPGDQDGGNPSGDDDAAPPHANEHDERVPN
>Mature_310_residues
SRAPGSSGSRCKDRLHTHMNTQEAKIVLETALICAQEPLRVGDLRRLFAEDVGADTIRVLLDELRQDWRQRGVELVALAS
GWRFQSRPEMREYLDRLNPEKPPKYSRAVMETLAIIAYRQPVTRGDIEEIRGVTVSTEVIKKLEDRSWIEVIGHRDVPGR
PALYATTKAFLDDLGLRTLDELPPLEDAQAQAQATLLDQQAIDFEELATAQPVVGDEEAFPESGATPPAGEVAEVAEAAP
VADESPAEAADAVAQASADAMHVADLASAVSEANGFHAEDAPGDQDGGNPSGDDDAAPPHANEHDERVPN

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 33708; Mature: 33576

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRAPGSSGSRCKDRLHTHMNTQEAKIVLETALICAQEPLRVGDLRRLFAEDVGADTIRV
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHH
LLDELRQDWRQRGVELVALASGWRFQSRPEMREYLDRLNPEKPPKYSRAVMETLAIIAYR
HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QPVTRGDIEEIRGVTVSTEVIKKLEDRSWIEVIGHRDVPGRPALYATTKAFLDDLGLRTL
CCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHH
DELPPLEDAQAQAQATLLDQQAIDFEELATAQPVVGDEEAFPESGATPPAGEVAEVAEAA
HHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHC
PVADESPAEAADAVAQASADAMHVADLASAVSEANGFHAEDAPGDQDGGNPSGDDDAAPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
HANEHDERVPN
CCCCCCCCCCC
>Mature Secondary Structure 
SRAPGSSGSRCKDRLHTHMNTQEAKIVLETALICAQEPLRVGDLRRLFAEDVGADTIRV
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHH
LLDELRQDWRQRGVELVALASGWRFQSRPEMREYLDRLNPEKPPKYSRAVMETLAIIAYR
HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
QPVTRGDIEEIRGVTVSTEVIKKLEDRSWIEVIGHRDVPGRPALYATTKAFLDDLGLRTL
CCCCCCCHHHHCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCHHHH
DELPPLEDAQAQAQATLLDQQAIDFEELATAQPVVGDEEAFPESGATPPAGEVAEVAEAA
HHCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHC
PVADESPAEAADAVAQASADAMHVADLASAVSEANGFHAEDAPGDQDGGNPSGDDDAAPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
HANEHDERVPN
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]