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The map label for this gene is ycaN [H]

Identifier: 73541591

GI number: 73541591

Start: 2085999

End: 2086925

Strand: Reverse

Name: ycaN [H]

Synonym: Reut_A1902

Alternate gene names: 73541591

Gene position: 2086925-2085999 (Counterclockwise)

Preceding gene: 73541593

Following gene: 73541589

Centisome position: 54.82

GC content: 63.86

Gene sequence:

>927_bases
ATGCACCGCACAGGAATGACCGAGCTGGAAGTGGTACTGGCCGTCGCGCGCCGCAGCAGTTTTCGTGGCGCGGCGCTGGA
GCTTGGCATGTCGGCCACGGCGGTGAGCAGCGCCGTGGCCGGCCTGGAGGCGCGGTTGAAAGTGCGCCTGTTCAACCGCT
CGACGCGCAGCGTGGCCATGACCGATGCGGGTCGGCGCTACGTGGAGCGCATAGCGCCGGCGCTTGCCGAAATCCAACGG
GCCAACGAAGAGGCGGCAATGGAGTCCGCTGCGCCCAGCGGCACCTTGCGCATCAACGCACCGCAGGGGGTAGCGCTCTT
GCTGCTGGAGCCGCTTTTCCATCAGTACGCGCAGCGCTATCCGCAGGTATTCATCGACATCGTGAGCGAGTCGCGTCTGA
TCGATGTCGTCGCGGAAGGCTTCGATGCAGGCATCCGTCTTGCCGAATCCGTGCCGCAGGACATGATCGCCGTGCCGCTT
TCCCGCGACCTCCGCATGCTCGTCGTGGCAACGCCCGACTACCTGAAGCGCAACGGTACGCCCAGGCATCCGCGCGATCT
GCTCAAGCACCAGAGCATCGGCATGCGCATGTCCCACGGCGGCATCTATCAATGGGAATTGAAGCACAAGAGCGAGAAGC
TGCAGATGGAACTGCCCGTGCGCATGGCCCTCAGCGAGATGCCGGCCATCAAGCAGGCGGTGCTGCTCGGACTCGGCATC
GGCTTCATCTCGGAGTGGTTCATTGACGAAGAACTGAAGTCCGGCGCCCTGGTCCCCGTGCTCGTTCCCTGGTGCCAGCC
GTTTGGCGGCCTCAGGCTTTACTACTCCGGCCACAGGTTCGTGACAGCGCGGCTACGCGCTTTGGTCGAACTGATCCATG
AGCTAGGTCTTGGCAAAGGTCGCCTGGCAGGAAATCAAGCGGGATAG

Upstream 100 bases:

>100_bases
ACTCCACATTGCGTCCGCGTGCATAGAAGTCTAGGAATACGTTATTGTTTTGATAAGCCGTCCTATGGCAGATGACGTAT
CCCGAAAATCAGGACAATCT

Downstream 100 bases:

>100_bases
TGGGAGTTCAATTCTGGTACCGATGCCGCTCTTTTTAGCAACGGGTTGATGGCATTCCGGATGAACCTGCCGTTTCGGAT
AGGCTGAAGGCGTTTTCACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MHRTGMTELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAMTDAGRRYVERIAPALAEIQR
ANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRYPQVFIDIVSESRLIDVVAEGFDAGIRLAESVPQDMIAVPL
SRDLRMLVVATPDYLKRNGTPRHPRDLLKHQSIGMRMSHGGIYQWELKHKSEKLQMELPVRMALSEMPAIKQAVLLGLGI
GFISEWFIDEELKSGALVPVLVPWCQPFGGLRLYYSGHRFVTARLRALVELIHELGLGKGRLAGNQAG

Sequences:

>Translated_308_residues
MHRTGMTELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAMTDAGRRYVERIAPALAEIQR
ANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRYPQVFIDIVSESRLIDVVAEGFDAGIRLAESVPQDMIAVPL
SRDLRMLVVATPDYLKRNGTPRHPRDLLKHQSIGMRMSHGGIYQWELKHKSEKLQMELPVRMALSEMPAIKQAVLLGLGI
GFISEWFIDEELKSGALVPVLVPWCQPFGGLRLYYSGHRFVTARLRALVELIHELGLGKGRLAGNQAG
>Mature_308_residues
MHRTGMTELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAMTDAGRRYVERIAPALAEIQR
ANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRYPQVFIDIVSESRLIDVVAEGFDAGIRLAESVPQDMIAVPL
SRDLRMLVVATPDYLKRNGTPRHPRDLLKHQSIGMRMSHGGIYQWELKHKSEKLQMELPVRMALSEMPAIKQAVLLGLGI
GFISEWFIDEELKSGALVPVLVPWCQPFGGLRLYYSGHRFVTARLRALVELIHELGLGKGRLAGNQAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=38.2758620689655, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=32.9896907216495, Blast_Score=150, Evalue=9e-38,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=30.7142857142857, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=31.0344827586207, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=28.8194444444444, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=28.7719298245614, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789639, Length=185, Percent_Identity=32.972972972973, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1786448, Length=293, Percent_Identity=27.9863481228669, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788706, Length=283, Percent_Identity=23.321554770318, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=275, Percent_Identity=28.7272727272727, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=132, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=168, Percent_Identity=32.1428571428571, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33955; Mature: 33955

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRTGMTELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAM
CCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEH
TDAGRRYVERIAPALAEIQRANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
PQVFIDIVSESRLIDVVAEGFDAGIRLAESVPQDMIAVPLSRDLRMLVVATPDYLKRNGT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCEEEEEECCHHHHCCCC
PRHPRDLLKHQSIGMRMSHGGIYQWELKHKSEKLQMELPVRMALSEMPAIKQAVLLGLGI
CCCHHHHHHHHHCCEEECCCCEEEEEECCCCCCEEEECCHHHHHHHCHHHHHHHHHHHHH
GFISEWFIDEELKSGALVPVLVPWCQPFGGLRLYYSGHRFVTARLRALVELIHELGLGKG
HHHHHHHHHHHHHCCCEEEEHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
RLAGNQAG
CCCCCCCC
>Mature Secondary Structure
MHRTGMTELEVVLAVARRSSFRGAALELGMSATAVSSAVAGLEARLKVRLFNRSTRSVAM
CCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEH
TDAGRRYVERIAPALAEIQRANEEAAMESAAPSGTLRINAPQGVALLLLEPLFHQYAQRY
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
PQVFIDIVSESRLIDVVAEGFDAGIRLAESVPQDMIAVPLSRDLRMLVVATPDYLKRNGT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCEEEEEECCHHHHCCCC
PRHPRDLLKHQSIGMRMSHGGIYQWELKHKSEKLQMELPVRMALSEMPAIKQAVLLGLGI
CCCHHHHHHHHHCCEEECCCCEEEEEECCCCCCEEEECCHHHHHHHCHHHHHHHHHHHHH
GFISEWFIDEELKSGALVPVLVPWCQPFGGLRLYYSGHRFVTARLRALVELIHELGLGKG
HHHHHHHHHHHHHCCCEEEEHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
RLAGNQAG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]