Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 73541589

GI number: 73541589

Start: 2084031

End: 2084993

Strand: Reverse

Name: glxA [H]

Synonym: Reut_A1900

Alternate gene names: 73541589

Gene position: 2084993-2084031 (Counterclockwise)

Preceding gene: 73541591

Following gene: 73541588

Centisome position: 54.77

GC content: 67.08

Gene sequence:

>963_bases
ATGCATCGCATTGGTTACCTGCTGGCCGACGGCTTCCAGATCATGGCGCTCGGCACCCAGGCTGTGTTCGAGGTCGCCAA
CGCGACGGTAATCGAACCCTTCTACTCGGTGGAGAACTTTTCGACTGCGGGCGGGCAGGTGACGTCGTCGCTCGGCATGA
CCCTGGGCACAAGGCGGCCGGGCCCGCGCGATCTCATCGACACCTGGATGGTGATCGGCGTGACCGATCCGGTTGCCTCT
CGTCCGGCGCCGGAGGAGCTCGCTCTCCTGCGTGACACAGCGCCCCGCGCGCGCCGCATCGCCGGACTCTGTACGGGCGG
CTTCGTGCTCGCAGAGGCCGGCTTGCTGGCCGGACGGCGGGCGACGACCCACTGGGCCTTTGCGCGTGATATGCGTCAGC
GGCATCCGGACATCGAGGTGGAGGAGGATCGCATCTTTATCGTTGATGGCGCGGTCTGGACGTCGGCAGGCATGACGGCC
GCGTTCGATCTCGCCCTTGCGATGGTCGAGCGCGATCTCGGTGCGGCCGTGGCGCGTTCCGTCGCACACAAGCTCGTCAT
GCATCAGCGGCGCTCTGGCGGGCAGTCGCAGCACTCCGAAATGCTTGACCTCTCGCCGAAGTCGGACCGCATACAGCATG
CCTTGAACTACGCCCGCCAGCATCTGAGCGAGCCGCTGACCGTCGACGCACTCGCGCAGTCCGCCAACCTCAGCCCGCGC
CAGTTCAGCAGGGCGTTCATGCAGGAGACCGGGCAGTCGCCGGCCAAGGCAGTGGAGGGACTACGGCTCGAGGCGGCGCG
GCTGATGATCGAGCAGAGTCGGCATCCGCTGGAGGTGGTGGCGCGTGAGACGGGCTTCCGTGACCGACGGCATTTGCGCG
AGGCGTTTTTGCGAGGATTCGGGGTGCCGCCGCAGGCGGTGAGGCGAGAAGCAAGAGGCGGCGCCGAGCTGTCCGAGCGT
TAG

Upstream 100 bases:

>100_bases
CCTGTGGGGTTTTCTGTGCCTGAATCGTAGGTGTCCCTGCGCATGGCGTAAATGACGTATATAGTCATGATTCAGGTCGT
TACGTTTTTCGGAGCAAAAC

Downstream 100 bases:

>100_bases
GTCCTTCTGCGTAGGCTTCCCTGTGGCCACGTCTGAAAATCCGCCAGGAGATTGCCCGCTATCAACCACTATCACTGCGA
TGCATGATGGCCTGTCGGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MHRIGYLLADGFQIMALGTQAVFEVANATVIEPFYSVENFSTAGGQVTSSLGMTLGTRRPGPRDLIDTWMVIGVTDPVAS
RPAPEELALLRDTAPRARRIAGLCTGGFVLAEAGLLAGRRATTHWAFARDMRQRHPDIEVEEDRIFIVDGAVWTSAGMTA
AFDLALAMVERDLGAAVARSVAHKLVMHQRRSGGQSQHSEMLDLSPKSDRIQHALNYARQHLSEPLTVDALAQSANLSPR
QFSRAFMQETGQSPAKAVEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHLREAFLRGFGVPPQAVRREARGGAELSER

Sequences:

>Translated_320_residues
MHRIGYLLADGFQIMALGTQAVFEVANATVIEPFYSVENFSTAGGQVTSSLGMTLGTRRPGPRDLIDTWMVIGVTDPVAS
RPAPEELALLRDTAPRARRIAGLCTGGFVLAEAGLLAGRRATTHWAFARDMRQRHPDIEVEEDRIFIVDGAVWTSAGMTA
AFDLALAMVERDLGAAVARSVAHKLVMHQRRSGGQSQHSEMLDLSPKSDRIQHALNYARQHLSEPLTVDALAQSANLSPR
QFSRAFMQETGQSPAKAVEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHLREAFLRGFGVPPQAVRREARGGAELSER
>Mature_320_residues
MHRIGYLLADGFQIMALGTQAVFEVANATVIEPFYSVENFSTAGGQVTSSLGMTLGTRRPGPRDLIDTWMVIGVTDPVAS
RPAPEELALLRDTAPRARRIAGLCTGGFVLAEAGLLAGRRATTHWAFARDMRQRHPDIEVEEDRIFIVDGAVWTSAGMTA
AFDLALAMVERDLGAAVARSVAHKLVMHQRRSGGQSQHSEMLDLSPKSDRIQHALNYARQHLSEPLTVDALAQSANLSPR
QFSRAFMQETGQSPAKAVEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHLREAFLRGFGVPPQAVRREARGGAELSER

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35154; Mature: 35154

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIGYLLADGFQIMALGTQAVFEVANATVIEPFYSVENFSTAGGQVTSSLGMTLGTRRP
CCCHHHHHHCCEEEEEEHHHHHHHHHCCHHCCHHHHHCCCCCCCCHHHHHHCCHHCCCCC
GPRDLIDTWMVIGVTDPVASRPAPEELALLRDTAPRARRIAGLCTGGFVLAEAGLLAGRR
CCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCC
ATTHWAFARDMRQRHPDIEVEEDRIFIVDGAVWTSAGMTAAFDLALAMVERDLGAAVARS
CHHHHHHHHHHHHHCCCCEEECCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAHKLVMHQRRSGGQSQHSEMLDLSPKSDRIQHALNYARQHLSEPLTVDALAQSANLSPR
HHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHH
QFSRAFMQETGQSPAKAVEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHLREAFLRGF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCC
GVPPQAVRREARGGAELSER
CCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHRIGYLLADGFQIMALGTQAVFEVANATVIEPFYSVENFSTAGGQVTSSLGMTLGTRRP
CCCHHHHHHCCEEEEEEHHHHHHHHHCCHHCCHHHHHCCCCCCCCHHHHHHCCHHCCCCC
GPRDLIDTWMVIGVTDPVASRPAPEELALLRDTAPRARRIAGLCTGGFVLAEAGLLAGRR
CCHHHHHHHHHEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCC
ATTHWAFARDMRQRHPDIEVEEDRIFIVDGAVWTSAGMTAAFDLALAMVERDLGAAVARS
CHHHHHHHHHHHHHCCCCEEECCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VAHKLVMHQRRSGGQSQHSEMLDLSPKSDRIQHALNYARQHLSEPLTVDALAQSANLSPR
HHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHH
QFSRAFMQETGQSPAKAVEGLRLEAARLMIEQSRHPLEVVARETGFRDRRHLREAFLRGF
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCC
GVPPQAVRREARGGAELSER
CCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]