Click here to switch to the map view.

The map label for this gene is skp [H]

Identifier: 73541561

GI number: 73541561

Start: 2047696

End: 2048223

Strand: Reverse

Name: skp [H]

Synonym: Reut_A1872

Alternate gene names: 73541561

Gene position: 2048223-2047696 (Counterclockwise)

Preceding gene: 73541562

Following gene: 73541560

Centisome position: 53.81

GC content: 61.36

Gene sequence:

>528_bases
ATGAATACAAAATCCAAACTGGTCAAATCCCTGAGCGCCGCCGCTGTGGCAGCTGCAGCGCTGTGTGCCGCGGCTCCGGC
AATGGCTCAGGAAGCCCGCATTGCCGCTGTGAATTCCGAGCGGATCCTGCGCGATTCGCAGCCAGCGAAGGCGGCTCAGG
TCAAGCTCGAGCAGGAATTCTCCAAGCGCGACCGCGAACTGCAGGACATGGCCCAGAAGATCAAGGGCATGGCCGACAAG
CTGGACAAGGATACAGCCGTGCTGGCCGATTCGGACCGTCAGCGTCGCCAACGCGAAGTCGCCGACCTGGACCGCGAATT
CCAGCGCAAGCAACGTGAATTCCGTGAAGACCTGAACCAGCGCCGCAATGAGGAACTGGCGCAGGTGCTCGAACGCGCCA
ACCGAGTGATCCGCTCGCTGGCCGAGCAGCGCAAGTACGATCTGATCGTGCAGGAAGCGGTGTACGTGAACCCGCGCATC
GACATCACGGACGATGTGATGAAGGCGCTGAACGCTGGCGGCAAGTAA

Upstream 100 bases:

>100_bases
CAGCATGGGCTTCCCGCTGAAGAAGGACAATACCGACAAGGTTCAGCGCTTCCAGTTCCAGATCGGCACTGCGTTCTGAT
TCTGTAAAAGGATCTGTTTC

Downstream 100 bases:

>100_bases
GCCGCTGGCCGTTCTTTTTTCAGGAAGTACCGCCATGCAGACACCCACACTGGGGCAGCTCGCCACCGAAAACGGCGCGC
AGGTTGTGGGTGATCCCGAC

Product: Outer membrane chaperone Skp (OmpH)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNTKSKLVKSLSAAAVAAAALCAAAPAMAQEARIAAVNSERILRDSQPAKAAQVKLEQEFSKRDRELQDMAQKIKGMADK
LDKDTAVLADSDRQRRQREVADLDREFQRKQREFREDLNQRRNEELAQVLERANRVIRSLAEQRKYDLIVQEAVYVNPRI
DITDDVMKALNAGGK

Sequences:

>Translated_175_residues
MNTKSKLVKSLSAAAVAAAALCAAAPAMAQEARIAAVNSERILRDSQPAKAAQVKLEQEFSKRDRELQDMAQKIKGMADK
LDKDTAVLADSDRQRRQREVADLDREFQRKQREFREDLNQRRNEELAQVLERANRVIRSLAEQRKYDLIVQEAVYVNPRI
DITDDVMKALNAGGK
>Mature_175_residues
MNTKSKLVKSLSAAAVAAAALCAAAPAMAQEARIAAVNSERILRDSQPAKAAQVKLEQEFSKRDRELQDMAQKIKGMADK
LDKDTAVLADSDRQRRQREVADLDREFQRKQREFREDLNQRRNEELAQVLERANRVIRSLAEQRKYDLIVQEAVYVNPRI
DITDDVMKALNAGGK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

None

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 19793; Mature: 19793

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTKSKLVKSLSAAAVAAAALCAAAPAMAQEARIAAVNSERILRDSQPAKAAQVKLEQEF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHH
SKRDRELQDMAQKIKGMADKLDKDTAVLADSDRQRRQREVADLDREFQRKQREFREDLNQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRNEELAQVLERANRVIRSLAEQRKYDLIVQEAVYVNPRIDITDDVMKALNAGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNTKSKLVKSLSAAAVAAAALCAAAPAMAQEARIAAVNSERILRDSQPAKAAQVKLEQEF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHH
SKRDRELQDMAQKIKGMADKLDKDTAVLADSDRQRRQREVADLDREFQRKQREFREDLNQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRNEELAQVLERANRVIRSLAEQRKYDLIVQEAVYVNPRIDITDDVMKALNAGGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA