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The map label for this gene is yfdE [H]

Identifier: 73541519

GI number: 73541519

Start: 2005122

End: 2006327

Strand: Reverse

Name: yfdE [H]

Synonym: Reut_A1830

Alternate gene names: 73541519

Gene position: 2006327-2005122 (Counterclockwise)

Preceding gene: 73541520

Following gene: 73541518

Centisome position: 52.71

GC content: 68.74

Gene sequence:

>1206_bases
ATGCGTGACCTTCCTCTCGATGGCGTGGTGGTCGTGGAACTGAGCGACAGCGCCTCGGCGCCGTTCGCCGGCCAGATCCT
TGCGGCGCTGGGCGCCGATGTGTGGAAGATCGAACGTCCCACCGGCGATTCGGCGCGCGGCTGGGGACCGAGCAAGTGGA
AGGGCAGCGGTGCCGCCTTCCATGCGATCAACCAGGGCAAGCGCTTCATCAGCCTCGACATCAAGGACCCGGACGACCTC
GCCACGCTGCATCGGCTCATTGCCGAGCATGCCGACGTGTTCTTTCACAACCTGCGTCCGGGCTCGGCCGCGCAATACGG
ACTGGACCCAGACAGCCTGCGCGTGACCAAGCCCGAACTGGTCTGCTGCGAGGTGGGCGCGTTCGGCCACGCCGGTCCGC
TGAACCAGGCGCCAGGCTACGATCCGCTGATGCAAGCCTTCGCCGGCATCATGAGCGTGACGGGTGAGGACGGACAGGCG
CCAGTGCGCGCCGGCGTGTCGATCGTCGACTTCGGCGCCGGCATGTGGGCCGTCATCGGCATCCTCGCCGCGCTGTGCCG
GCGGCAGCGCAAGCACGTGGGAGCGACGGTCAACAGCTCGCTGCTGGAGACGGCCATTGCCTGGATGACAGTGGGCATTG
CCAACTACAACGCCGACGGTGACACGGGTGGCCGGCATGGCTCGGGCGTCGGCTTCATCGTGCCGCACCGCGCGTACGAC
ACGGCTGATGGCCATCTGGTGGTCAGTTGCGCCAACGACCGGCTCTTCGCGCGCCTGTGTGCCGCGCTGGACCGGCCGGA
GTGGGCCACCGACCCGCGCTTTGCCACCAATGACGGGCGGTTGCGCCACCGCGCGCAGATCGATGGCCTGATCGGCGGAC
GGCTGGCCGAACATCCGCGTGCGCACTGGCAGCAGGTGCTGGGCGCAGCCGGCCTGCCGTGCGCGCCGGTGCAGACCACC
AGCGAACTGGTCAACCATGAGCAGACACGGGCGCTGGGCATCATCGGCAAGCCGTCCGGGGACGATCTCGCGCTGGTCGG
ATTGCCGCTGTCATTCAATGGCAAGCGGCCGGGGCCGCTGTCGGCGGCGCGCGACGTGGGCCAGGACAATGCGGACCTTG
ACAGGCTGATGGCATCGCGGCGCTGCTGGCGCGATGCGGAGCCTTCGGGCGGCGAGGCAGTGCTTGACCCGGAGATCGCG
AAGTAG

Upstream 100 bases:

>100_bases
GGCGTCGTCGCCGGGCGCGTTTGCCCAACAACTGAACGAAGAGGTCGCGGTATGGAAAGGCCTCTTCGCCGAACTCAACT
ACAAGCCGGAGTAAGCAGCC

Downstream 100 bases:

>100_bases
AACACGCCAGCATCACCACCGGAACCCCGCTCCTTGACGAGCCGGGTTTCAACGTTTGGGGAGACCAATACGATGCGCAA
GACCCAGGGCCCGCTCGCGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRDLPLDGVVVVELSDSASAPFAGQILAALGADVWKIERPTGDSARGWGPSKWKGSGAAFHAINQGKRFISLDIKDPDDL
ATLHRLIAEHADVFFHNLRPGSAAQYGLDPDSLRVTKPELVCCEVGAFGHAGPLNQAPGYDPLMQAFAGIMSVTGEDGQA
PVRAGVSIVDFGAGMWAVIGILAALCRRQRKHVGATVNSSLLETAIAWMTVGIANYNADGDTGGRHGSGVGFIVPHRAYD
TADGHLVVSCANDRLFARLCAALDRPEWATDPRFATNDGRLRHRAQIDGLIGGRLAEHPRAHWQQVLGAAGLPCAPVQTT
SELVNHEQTRALGIIGKPSGDDLALVGLPLSFNGKRPGPLSAARDVGQDNADLDRLMASRRCWRDAEPSGGEAVLDPEIA
K

Sequences:

>Translated_401_residues
MRDLPLDGVVVVELSDSASAPFAGQILAALGADVWKIERPTGDSARGWGPSKWKGSGAAFHAINQGKRFISLDIKDPDDL
ATLHRLIAEHADVFFHNLRPGSAAQYGLDPDSLRVTKPELVCCEVGAFGHAGPLNQAPGYDPLMQAFAGIMSVTGEDGQA
PVRAGVSIVDFGAGMWAVIGILAALCRRQRKHVGATVNSSLLETAIAWMTVGIANYNADGDTGGRHGSGVGFIVPHRAYD
TADGHLVVSCANDRLFARLCAALDRPEWATDPRFATNDGRLRHRAQIDGLIGGRLAEHPRAHWQQVLGAAGLPCAPVQTT
SELVNHEQTRALGIIGKPSGDDLALVGLPLSFNGKRPGPLSAARDVGQDNADLDRLMASRRCWRDAEPSGGEAVLDPEIA
K
>Mature_401_residues
MRDLPLDGVVVVELSDSASAPFAGQILAALGADVWKIERPTGDSARGWGPSKWKGSGAAFHAINQGKRFISLDIKDPDDL
ATLHRLIAEHADVFFHNLRPGSAAQYGLDPDSLRVTKPELVCCEVGAFGHAGPLNQAPGYDPLMQAFAGIMSVTGEDGQA
PVRAGVSIVDFGAGMWAVIGILAALCRRQRKHVGATVNSSLLETAIAWMTVGIANYNADGDTGGRHGSGVGFIVPHRAYD
TADGHLVVSCANDRLFARLCAALDRPEWATDPRFATNDGRLRHRAQIDGLIGGRLAEHPRAHWQQVLGAAGLPCAPVQTT
SELVNHEQTRALGIIGKPSGDDLALVGLPLSFNGKRPGPLSAARDVGQDNADLDRLMASRRCWRDAEPSGGEAVLDPEIA
K

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=365, Percent_Identity=29.8630136986301, Blast_Score=205, Evalue=5e-53,
Organism=Homo sapiens, GI300863124, Length=331, Percent_Identity=31.4199395770393, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI13376042, Length=331, Percent_Identity=28.0966767371601, Blast_Score=173, Evalue=3e-43,
Organism=Homo sapiens, GI300863126, Length=365, Percent_Identity=26.027397260274, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI42794625, Length=357, Percent_Identity=26.0504201680672, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266456254, Length=357, Percent_Identity=26.0504201680672, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458393, Length=262, Percent_Identity=29.0076335877863, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI266458397, Length=262, Percent_Identity=29.0076335877863, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI42822893, Length=146, Percent_Identity=31.5068493150685, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI266458395, Length=146, Percent_Identity=31.5068493150685, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=31.6239316239316, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1788717, Length=393, Percent_Identity=25.6997455470738, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786222, Length=348, Percent_Identity=25, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI32564160, Length=330, Percent_Identity=24.8484848484848, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=246, Percent_Identity=27.2357723577236, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24648431, Length=370, Percent_Identity=35.1351351351351, Blast_Score=221, Evalue=5e-58,
Organism=Drosophila melanogaster, GI24585488, Length=332, Percent_Identity=26.2048192771084, Blast_Score=101, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42492; Mature: 42492

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDLPLDGVVVVELSDSASAPFAGQILAALGADVWKIERPTGDSARGWGPSKWKGSGAAF
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
HAINQGKRFISLDIKDPDDLATLHRLIAEHADVFFHNLRPGSAAQYGLDPDSLRVTKPEL
EEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCE
VCCEVGAFGHAGPLNQAPGYDPLMQAFAGIMSVTGEDGQAPVRAGVSIVDFGAGMWAVIG
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCEEEECCCCHHHHHH
ILAALCRRQRKHVGATVNSSLLETAIAWMTVGIANYNADGDTGGRHGSGVGFIVPHRAYD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEECCCCCC
TADGHLVVSCANDRLFARLCAALDRPEWATDPRFATNDGRLRHRAQIDGLIGGRLAEHPR
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHCCHHHHCHH
AHWQQVLGAAGLPCAPVQTTSELVNHEQTRALGIIGKPSGDDLALVGLPLSFNGKRPGPL
HHHHHHHCCCCCCCCCCHHHHHHHCCHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCCC
SAARDVGQDNADLDRLMASRRCWRDAEPSGGEAVLDPEIAK
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MRDLPLDGVVVVELSDSASAPFAGQILAALGADVWKIERPTGDSARGWGPSKWKGSGAAF
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCEEE
HAINQGKRFISLDIKDPDDLATLHRLIAEHADVFFHNLRPGSAAQYGLDPDSLRVTKPEL
EEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCE
VCCEVGAFGHAGPLNQAPGYDPLMQAFAGIMSVTGEDGQAPVRAGVSIVDFGAGMWAVIG
EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCEEEECCCCHHHHHH
ILAALCRRQRKHVGATVNSSLLETAIAWMTVGIANYNADGDTGGRHGSGVGFIVPHRAYD
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCEEEEECCCCCC
TADGHLVVSCANDRLFARLCAALDRPEWATDPRFATNDGRLRHRAQIDGLIGGRLAEHPR
CCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCEECCCCCCHHHHHHHHHHCCHHHHCHH
AHWQQVLGAAGLPCAPVQTTSELVNHEQTRALGIIGKPSGDDLALVGLPLSFNGKRPGPL
HHHHHHHCCCCCCCCCCHHHHHHHCCHHHHEEEEEECCCCCCEEEEEEEEECCCCCCCCC
SAARDVGQDNADLDRLMASRRCWRDAEPSGGEAVLDPEIAK
HHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]