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The map label for this gene is clpV1 [H]

Identifier: 73541416

GI number: 73541416

Start: 1864803

End: 1867499

Strand: Reverse

Name: clpV1 [H]

Synonym: Reut_A1727

Alternate gene names: 73541416

Gene position: 1867499-1864803 (Counterclockwise)

Preceding gene: 73541417

Following gene: 73541415

Centisome position: 49.06

GC content: 67.93

Gene sequence:

>2697_bases
ATGGACATCGATATCCGCACACTGCTGAGCCGGCTTAATCCGGAATGCCGCCAGGCCATGGAGGCCGCGGCGCAACTCTG
CGTGCGCCACACCCACTACAACGTCGATGTCGAGCACCTGTTGGTGCAGCTGCTGGAGGTCGAGGCGCGCGACCTGCACG
TCATCCTCGAGCACTTCGGCATTGCGCGCGAGACGCTGCTGGCGCAGCTGCACAAGGCCATCGACGGCTTCAAGCGCGGC
AATGGCCGTACCCCGGCGCTGTCGCCCAACTTCTCGCCGCTGTTCCAGGAGGCCTGGCTGCTCAGCTCGATGCTGCTGGG
CGAGCAACAGGTGCGCGCCGGCACGCTGATGCTGGCGCTGCTTGAAGTGGAAAGCCTGCGCGGCCTGCTTCTGGAGTCGG
CGCCGTCCCTGCTGAAGATTCCACGCACGGCATTGCGCGAGGCGCTGCCCGTGCTGCTGGGCGCTGGCGCTGGCGGCGGC
GCGCCGGCCGATGTAGCCGGGCGCGCCATGCCGGCAATGCCGCAGGCCAGCGCCGGCGGCGCACAGAAATCCGCGCTGAA
CCAATACACGATCGACCTGACGGCGCTGGCGCGCGAAGGCGCGATCGATCCGGTGCGCGGGCGCGACGGCGAGATCCGCC
AGCTTGTGGACGTACTGCTGCGCCGTCGCCAGAACAACCCCATCCTGACCGGCGAGGCCGGCGTCGGCAAGACCGCCGTA
GTGGAAGGCTTTGCCCAGCGCATCGTGGCCGGCGACGTGCCGCCGGCACTGCGCAATGTCTCGGTGCGCTCGCTCGATCT
GGCCTTGCTGCAGGCCGGCGCTGGCGTCAAGGGCGAGTTCGAGAACCGGCTCAAGTCGGTAATTGCCGAGGTCGCGGCCT
CGCCGGTACCGGTGATCCTGTTCATCGACGAGGCCCACCAGCTGATCGGCGCGGGTGGCAGCGAAGGGCAGGGCGATGCC
GCCAACCTGCTCAAGCCGGCGCTGGCACGCGGCGAGCTGCGCACCATCGCCGCGACCACTTGGGCCGAGTACAAGAAGTA
CATCGAGCGCGATCCAGCACTGGCGCGCCGCTTCCAGATCGTCAAGGTGGAGGAGCCCAGCGAGCCGGTGGCCGTGGAGA
TGCTGCGCGGCATGGTGAAGAAGCTCGAAGCGCACCATGGCGTGGAGATCCTCGACGATGCCGTGCGCGATGCGGTCAAG
CTGTCGCACCGCTATGTGTCGGGACGCCAGTTGCCGGACAAGGCGATCAGCGTGCTCGATACCGCTTGCGCGCGCGTGGC
GATCGCGCAGAACGGCGTGCCGGCAGAGATCGAATCGCTCGGGCGCAGCATCGAAAACACCGAGAACCAGTTGCGCATTC
TGCGGCATGAGGCGGCCACCGGTGCCAGCCGTGCCGACGAGATTGCCACTGCCACGCGCCAGCTCGAGGAGGCACGCAGC
CAGCATGCGCGCCTGTCCGACAAGCTGGTGATGGAAAAGCGCGTAGTCGACGAGATCCTGGCATGGCGGCGCAGGATTGC
CACGTGCCTGGCCGGCCAGGCGGGTGGCGAAGCGGGCGTGGATGCACAGGACAGCGAAGACAGCGACGACAGCGCGGAAT
CGCTGAGCGCCAACCTGCTGCGGCTTGAAAAGGGCCTGGAGGCCGTGCAGTGCGACGAGCCAATGGTGCCGGTGTGCGTC
AATTCGGCAGCGGTGGCCGAGGTCATCTCGAGCTGGACTGGCATCCCGGTGGGCCGCATGCTGGCCGACGAGCTTCACAC
CGTGCTTCACCTGCACGACAAGCTGGCCGAGCGGGTGGTCGGCCAGGACGAGGCGCTCGATGCGATCGCGCGGCGCATCC
GAACCTTCCGCGCGGATCTCGACGACCCCGGCAAGCCGGTGGGCGTGTTCCTGCTGGTCGGTCCGAGCGGCGTTGGCAAG
ACCGAGACCGCCTGCGCGCTGGCGGACTTGTTGTACGGTGGCGAGCGCAACATGATCACCGTCAACATGTCGGAATTCCA
GGAGGCGCACAGCGTGTCGGGGCTCAAGGGCGCGCCCCCGGGCTATGTCGGCTACGGGCGCGGGGGCGTGCTGACCGAAG
CGGTGCGGCGGCGCCCCTATAGCGTGGTGCTGCTCGACGAAATGGAGAAGGCGCACCCCGACGTGCTGGAGCTGTTCTTC
CAGGTATTCGACAAGGGCATGATGGAAGACGGCGAAGGGGTACCGATCGACTTCCGCAACACGGTCATCCTGCTGACCTC
GAACGCGGCCCAGGACGTCATCACCGAGGCCTCGCAAGGCGGCCGGCGCCCGCCACCGGAAGAACTTGTAGAACGCCTGC
GTCCGGCCCTGCTGCAGCGCTTCAGCCCGGCCTTCCTGGCGCGCATGGTGCTGGTGCCGTACTACCACCTTGGCGATGCG
CAGATCACCGCCATCGTCGACCTCAAGCTTGGCCGGATGGCGCAGCGCTTCGAGCGCAACCACAACGCCCGCCTGACCTG
GGACGACGCGCTGGCGCGCACCATCGTGCAGCGCTGCAGCGAAGTCGACAGCGGCGCGCGCAACGTCGACCATATCCTGA
CCCAGTCGGTGCTGCCGGAGCTCGCCCATCAGGTGCTGGAGCGCATGTCGATCGCCGAGCCGTTCGGCGGTGTGCATCTC
TCGCTTGACGCGCAGGGCGGCCTGGCCTTCCGTTTCCTGCCGCCTGCGGAGGCCTGA

Upstream 100 bases:

>100_bases
CTGGACTGCGTGGCTGGCCGGTGGTGCTGCTGCACGTCCCGCACCGGTGCGGCTGTCGCTGCGTGTCGGCGCCGACACGC
TTTCATGATCCGAGACAAGC

Downstream 100 bases:

>100_bases
GGCAATGATTCCGGCCACCGCCACCCAGTCCGACAGCTTCGCCACGGTCACCACGCCGTTTGGCGACGATGTGCTGCTGC
TCGACGGATTTGCCGGGCGC

Product: AAA ATPase, central region:Clp, N terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 898; Mature: 898

Protein sequence:

>898_residues
MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFGIARETLLAQLHKAIDGFKRG
NGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLALLEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGG
APADVAGRAMPAMPQASAGGAQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVILFIDEAHQLIGAGGSEGQGDA
ANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQIVKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVK
LSHRYVSGRQLPDKAISVLDTACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARS
QHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLLRLEKGLEAVQCDEPMVPVCV
NSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVVGQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGK
TETACALADLLYGGERNMITVNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFF
QVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQRFSPAFLARMVLVPYYHLGDA
QITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCSEVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHL
SLDAQGGLAFRFLPPAEA

Sequences:

>Translated_898_residues
MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFGIARETLLAQLHKAIDGFKRG
NGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLALLEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGG
APADVAGRAMPAMPQASAGGAQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVILFIDEAHQLIGAGGSEGQGDA
ANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQIVKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVK
LSHRYVSGRQLPDKAISVLDTACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARS
QHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLLRLEKGLEAVQCDEPMVPVCV
NSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVVGQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGK
TETACALADLLYGGERNMITVNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFF
QVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQRFSPAFLARMVLVPYYHLGDA
QITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCSEVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHL
SLDAQGGLAFRFLPPAEA
>Mature_898_residues
MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFGIARETLLAQLHKAIDGFKRG
NGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLALLEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGG
APADVAGRAMPAMPQASAGGAQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAV
VEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVILFIDEAHQLIGAGGSEGQGDA
ANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQIVKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVK
LSHRYVSGRQLPDKAISVLDTACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARS
QHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLLRLEKGLEAVQCDEPMVPVCV
NSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVVGQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGK
TETACALADLLYGGERNMITVNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFF
QVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQRFSPAFLARMVLVPYYHLGDA
QITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCSEVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHL
SLDAQGGLAFRFLPPAEA

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=302, Percent_Identity=34.1059602649007, Blast_Score=161, Evalue=2e-39,
Organism=Escherichia coli, GI1788943, Length=876, Percent_Identity=38.2420091324201, Blast_Score=521, Evalue=1e-148,
Organism=Escherichia coli, GI1787109, Length=424, Percent_Identity=36.0849056603774, Blast_Score=237, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6320464, Length=699, Percent_Identity=39.7711015736767, Blast_Score=457, Evalue=1e-129,
Organism=Saccharomyces cerevisiae, GI6323002, Length=700, Percent_Identity=37.7142857142857, Blast_Score=436, Evalue=1e-123,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 97241; Mature: 97241

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
IARETLLAQLHKAIDGFKRGNGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGGAPADVAGRAMPAMPQASAGG
HHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHEECCCCCCCCHHHCCCCCCCCCCCCCCC
AQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAV
HHHHHHHHHEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHH
VEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVIL
HHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
FIDEAHQLIGAGGSEGQGDAANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQI
EECHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEE
VKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVKLSHRYVSGRQLPDKAISVLD
EEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
TACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARS
HHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLEKGLEAVQCDEPMVPVCVNSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVV
HHHHCCCHHCCCCCCCCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGKTETACALADLLYGGERNMIT
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
VNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFF
EEHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHH
QVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQR
HHHHHHHCCCCCCCCEEECCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FSPAFLARMVLVPYYHLGDAQITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCS
CCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
EVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHLSLDAQGGLAFRFLPPAEA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCC
>Mature Secondary Structure
MDIDIRTLLSRLNPECRQAMEAAAQLCVRHTHYNVDVEHLLVQLLEVEARDLHVILEHFG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
IARETLLAQLHKAIDGFKRGNGRTPALSPNFSPLFQEAWLLSSMLLGEQQVRAGTLMLAL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LEVESLRGLLLESAPSLLKIPRTALREALPVLLGAGAGGGAPADVAGRAMPAMPQASAGG
HHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHEECCCCCCCCHHHCCCCCCCCCCCCCCC
AQKSALNQYTIDLTALAREGAIDPVRGRDGEIRQLVDVLLRRRQNNPILTGEAGVGKTAV
HHHHHHHHHEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHH
VEGFAQRIVAGDVPPALRNVSVRSLDLALLQAGAGVKGEFENRLKSVIAEVAASPVPVIL
HHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
FIDEAHQLIGAGGSEGQGDAANLLKPALARGELRTIAATTWAEYKKYIERDPALARRFQI
EECHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEE
VKVEEPSEPVAVEMLRGMVKKLEAHHGVEILDDAVRDAVKLSHRYVSGRQLPDKAISVLD
EEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
TACARVAIAQNGVPAEIESLGRSIENTENQLRILRHEAATGASRADEIATATRQLEEARS
HHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
QHARLSDKLVMEKRVVDEILAWRRRIATCLAGQAGGEAGVDAQDSEDSDDSAESLSANLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLEKGLEAVQCDEPMVPVCVNSAAVAEVISSWTGIPVGRMLADELHTVLHLHDKLAERVV
HHHHCCCHHCCCCCCCCHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
GQDEALDAIARRIRTFRADLDDPGKPVGVFLLVGPSGVGKTETACALADLLYGGERNMIT
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
VNMSEFQEAHSVSGLKGAPPGYVGYGRGGVLTEAVRRRPYSVVLLDEMEKAHPDVLELFF
EEHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHH
QVFDKGMMEDGEGVPIDFRNTVILLTSNAAQDVITEASQGGRRPPPEELVERLRPALLQR
HHHHHHHCCCCCCCCEEECCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FSPAFLARMVLVPYYHLGDAQITAIVDLKLGRMAQRFERNHNARLTWDDALARTIVQRCS
CCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
EVDSGARNVDHILTQSVLPELAHQVLERMSIAEPFGGVHLSLDAQGGLAFRFLPPAEA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]