| Definition | Ralstonia eutropha JMP134 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_007347 |
| Length | 3,806,533 |
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The map label for this gene is ifcA [H]
Identifier: 73541349
GI number: 73541349
Start: 1789831
End: 1791312
Strand: Reverse
Name: ifcA [H]
Synonym: Reut_A1659
Alternate gene names: 73541349
Gene position: 1791312-1789831 (Counterclockwise)
Preceding gene: 73541350
Following gene: 73541346
Centisome position: 47.06
GC content: 64.78
Gene sequence:
>1482_bases ATGTCATTGGAGTTCTCCGTCACGCACCCCTGTCGCCTTGGGAACGTCCCGCAATGGGACATGGAAACCGACGTGGTCGT CGTCGGCTTTGGCGCGGCGGGCGCGTGTGCAGCCATCGAAGCTGCCCAAGCCGGCGCTGTGGTCACGCTGTTCGAGGTCG CTTCCGGCAGTGGCGGCACAAGCGCCTTGTCCGGGGGCGAGATTTACCTGGGCGGTGGCGGTGGTACGCCCGCTCAACAG CAGGCTGGCTTTGTCGACGATACCGAGGACCTGTACCGCTACCTGCTCATGGCAGGCGGCCCTGATGCCGACGAGCCGAA GGTTCGCACCTATGCAGACGGCAGCCGTGCTCACTATGACTGGCTGGTCGAACAGGGGCTGACCTACAAGAACACCTATC TGCCAGAGCGCATGCTTGAGCCGGAGACGGACGACTGCCTGATCTGGTCGGGCAGTGAGGAGGCATGGCCTTTTTCCGGC AACGCGAAGCCTTGCCCGCGCGGCCATACGCCGCAGTGGGCCGGCTGGGGCGGCGGCCGCATGCTGATGGACGTGCTGGC CGCGCGCGTCGTCAAGCTTGGCGTGGATGTGCGCTATGACAGCCGCGTCCTCGCGTTGATTGCCGATGAGGCGAACAACG TGCACGGGGTTGTCGTGCGCATCAACGGCCAGACGCGCTACGCACGCGCACGCAGCGGCGTCGTGCTTTGCGCCGGCGGG TTCGTGATGAATCGCGACATGGTCAGGCGACACGCACCCGGCCTGCTGCGCGCGAACGAGCCGATTGGCAGCCCCGGAGA CGACGGCTCGGGCATCCTGATGGGAATCAGCGTGGGCGGCGCCGCGATACACATGGATCAGGGCTTCGTCAGCTTGCCCT TCTACGCGCCCGAATCGCTGATCAAGGGCGTGTTCGTCAATGAACGCGGCCAGCGCTTCATCAACGAGGACTGCTATCAC GGCCGCATCGGCCACCACATCATGCAGCAGCTCGGCGACCGTATCTATCTGCTGGTCGATAGTGCCACGTATCAGCAGCC CGCTGAATTCACGCGCATCGGCATTGCCGCCGCTGGCGACACCTGGGAGGAAGTCGAGCATGATCTGGGCATGCCGGCGG GAACACTGAGCGCCACGGTGTCGAACTACAACCGGCACGCTGCCGACGGCGCTGATCCCCTGTTCCACAAAGCGGCGAAG TGGCTGAAACCGCTCGATGAACCGCCCTTTGTCGCGCTCGACTGCCGCGTCGACTATGCGTTCTATCCGCACTTCACGCT GGGAGGATTGGACACATTGCCCACTGGCCAGGTGCTCAGCGAGAAACGCGTACCGATCCACGGTCTTTATGCTGCCGGAC GAACGTCGTGTGGATTGCCACGCTGGGGCGGCGGGTACAGCTCAGGGATGTCACTCGCGGATGCCACCTTCTTCGGCCGA CAAGCCGGGCGGCACGCTGCCGCCTCGGCGAGCCGATCCTGA
Upstream 100 bases:
>100_bases CAAAGTAATGTCGGCTCGGGTTGCCGCAAGGCAACGTGGTGAAGCATCAACAAGCCCGGACACGACCCGTGTCCGTGGGC TCTTCTCACGAGGCTGATTC
Downstream 100 bases:
>100_bases GCTCAACTGGTAGCGGGACGCGGATTCAAACCGCCGATACGCCGTTCGACTGCGTCGTCCCGCCAAAGGTGGGCGGCGCC GTCACGATGGAGCGAAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MSLEFSVTHPCRLGNVPQWDMETDVVVVGFGAAGACAAIEAAQAGAVVTLFEVASGSGGTSALSGGEIYLGGGGGTPAQQ QAGFVDDTEDLYRYLLMAGGPDADEPKVRTYADGSRAHYDWLVEQGLTYKNTYLPERMLEPETDDCLIWSGSEEAWPFSG NAKPCPRGHTPQWAGWGGGRMLMDVLAARVVKLGVDVRYDSRVLALIADEANNVHGVVVRINGQTRYARARSGVVLCAGG FVMNRDMVRRHAPGLLRANEPIGSPGDDGSGILMGISVGGAAIHMDQGFVSLPFYAPESLIKGVFVNERGQRFINEDCYH GRIGHHIMQQLGDRIYLLVDSATYQQPAEFTRIGIAAAGDTWEEVEHDLGMPAGTLSATVSNYNRHAADGADPLFHKAAK WLKPLDEPPFVALDCRVDYAFYPHFTLGGLDTLPTGQVLSEKRVPIHGLYAAGRTSCGLPRWGGGYSSGMSLADATFFGR QAGRHAAASASRS
Sequences:
>Translated_493_residues MSLEFSVTHPCRLGNVPQWDMETDVVVVGFGAAGACAAIEAAQAGAVVTLFEVASGSGGTSALSGGEIYLGGGGGTPAQQ QAGFVDDTEDLYRYLLMAGGPDADEPKVRTYADGSRAHYDWLVEQGLTYKNTYLPERMLEPETDDCLIWSGSEEAWPFSG NAKPCPRGHTPQWAGWGGGRMLMDVLAARVVKLGVDVRYDSRVLALIADEANNVHGVVVRINGQTRYARARSGVVLCAGG FVMNRDMVRRHAPGLLRANEPIGSPGDDGSGILMGISVGGAAIHMDQGFVSLPFYAPESLIKGVFVNERGQRFINEDCYH GRIGHHIMQQLGDRIYLLVDSATYQQPAEFTRIGIAAAGDTWEEVEHDLGMPAGTLSATVSNYNRHAADGADPLFHKAAK WLKPLDEPPFVALDCRVDYAFYPHFTLGGLDTLPTGQVLSEKRVPIHGLYAAGRTSCGLPRWGGGYSSGMSLADATFFGR QAGRHAAASASRS >Mature_492_residues SLEFSVTHPCRLGNVPQWDMETDVVVVGFGAAGACAAIEAAQAGAVVTLFEVASGSGGTSALSGGEIYLGGGGGTPAQQQ AGFVDDTEDLYRYLLMAGGPDADEPKVRTYADGSRAHYDWLVEQGLTYKNTYLPERMLEPETDDCLIWSGSEEAWPFSGN AKPCPRGHTPQWAGWGGGRMLMDVLAARVVKLGVDVRYDSRVLALIADEANNVHGVVVRINGQTRYARARSGVVLCAGGF VMNRDMVRRHAPGLLRANEPIGSPGDDGSGILMGISVGGAAIHMDQGFVSLPFYAPESLIKGVFVNERGQRFINEDCYHG RIGHHIMQQLGDRIYLLVDSATYQQPAEFTRIGIAAAGDTWEEVEHDLGMPAGTLSATVSNYNRHAADGADPLFHKAAKW LKPLDEPPFVALDCRVDYAFYPHFTLGGLDTLPTGQVLSEKRVPIHGLYAAGRTSCGLPRWGGGYSSGMSLADATFFGRQ AGRHAAASASRS
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 52740; Mature: 52609
Theoretical pI: Translated: 5.55; Mature: 5.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEFSVTHPCRLGNVPQWDMETDVVVVGFGAAGACAAIEAAQAGAVVTLFEVASGSGGT CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCCCC SALSGGEIYLGGGGGTPAQQQAGFVDDTEDLYRYLLMAGGPDADEPKVRTYADGSRAHYD CCCCCCEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHH WLVEQGLTYKNTYLPERMLEPETDDCLIWSGSEEAWPFSGNAKPCPRGHTPQWAGWGGGR HHHHCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH MLMDVLAARVVKLGVDVRYDSRVLALIADEANNVHGVVVRINGQTRYARARSGVVLCAGG HHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEEEEEEECCCEEEECCCCCEEEEECC FVMNRDMVRRHAPGLLRANEPIGSPGDDGSGILMGISVGGAAIHMDQGFVSLPFYAPESL EEECHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEECCCCCHHHH IKGVFVNERGQRFINEDCYHGRIGHHIMQQLGDRIYLLVDSATYQQPAEFTRIGIAAAGD HCCEEECCCCHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHEEEEEECCC TWEEVEHDLGMPAGTLSATVSNYNRHAADGADPLFHKAAKWLKPLDEPPFVALDCRVDYA CHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEE FYPHFTLGGLDTLPTGQVLSEKRVPIHGLYAAGRTSCGLPRWGGGYSSGMSLADATFFGR ECCCEEECCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH QAGRHAAASASRS HCCCHHHHCCCCC >Mature Secondary Structure SLEFSVTHPCRLGNVPQWDMETDVVVVGFGAAGACAAIEAAQAGAVVTLFEVASGSGGT CEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCCCC SALSGGEIYLGGGGGTPAQQQAGFVDDTEDLYRYLLMAGGPDADEPKVRTYADGSRAHYD CCCCCCEEEEECCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHH WLVEQGLTYKNTYLPERMLEPETDDCLIWSGSEEAWPFSGNAKPCPRGHTPQWAGWGGGR HHHHCCCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH MLMDVLAARVVKLGVDVRYDSRVLALIADEANNVHGVVVRINGQTRYARARSGVVLCAGG HHHHHHHHHHHHHCCCEEECCEEEEEEECCCCCEEEEEEEECCCEEEECCCCCEEEEECC FVMNRDMVRRHAPGLLRANEPIGSPGDDGSGILMGISVGGAAIHMDQGFVSLPFYAPESL EEECHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEECCCCCHHHH IKGVFVNERGQRFINEDCYHGRIGHHIMQQLGDRIYLLVDSATYQQPAEFTRIGIAAAGD HCCEEECCCCHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHEEEEEECCC TWEEVEHDLGMPAGTLSATVSNYNRHAADGADPLFHKAAKWLKPLDEPPFVALDCRVDYA CHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEE FYPHFTLGGLDTLPTGQVLSEKRVPIHGLYAAGRTSCGLPRWGGGYSSGMSLADATFFGR ECCCEEECCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH QAGRHAAASASRS HCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]