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The map label for this gene is yiaD [H]

Identifier: 73540381

GI number: 73540381

Start: 727948

End: 728586

Strand: Reverse

Name: yiaD [H]

Synonym: Reut_A0675

Alternate gene names: 73540381

Gene position: 728586-727948 (Counterclockwise)

Preceding gene: 73540396

Following gene: 73540380

Centisome position: 19.14

GC content: 67.14

Gene sequence:

>639_bases
ATGAAATTCAAGTTCGCCACCGTCTCGCTCGCCGCGGCCACACTTCTGGCTGCCGGCTGCGCCACCGAACAACAGACGCA
CACCGCCGTCGGGACCGGCGTGGGCGCTGCCGTGGGCGCGGGGCTGGGCAACCTGATCGGCGGCAACACGACTGGCACAC
TGGTCGGCGCTGCCGTGGGCGGCGCAGTCGGTGGCGCCACGGGCTACAACTGGAACGCCATCCGCGGCAAGCTGAACAAG
GACACGGCCGGCACCGGCACCCAGATCACCGAGCAGCCGGACGGCTCGCTCAAGGTCAATATCCCGAGCCAGGTCACGTT
CGATACCGACAGCGCCACGATCAAGCCGTCGTTCCGCTCGGTGCTCGACCAGGTCGCCCAGACGCTGGGCCAGCACCAGG
ACGTGGTCGCCAATGTCGTGGGCCATACCGATAGCACCGGCAACGCGCAGTACAACATGCAGCTGTCGCAGCGGCGCGCC
CAGAGCGTGGCCACCTACCTGGGTGATCGCGGCGTCGCACGGAACCGCCTCTCGGCCGAGGGGCGCGGCCAGACTCAGCC
CGTCGCGGACAACGCTACCGAGGCCGGCCGGACACAAAATCGCCGGGTCGAAATTTTTTTGAAACCAATTCAGGGATGA

Upstream 100 bases:

>100_bases
GTTGCGAGGTGCGCCGGGTGCGCAGCGCGTTACTATCGGCGTTACCATCTACGTTGCAGCAGGCAAGAATACTTCTACGG
GATCTTCAGAAGGAGAAAGC

Downstream 100 bases:

>100_bases
CCTAGTCATAGAAACAGGTACCGCTTGCCACCGTTGCTGGCTCGCGATAGGTGGCTGACCTCCCGGGCGGTGCCTGATTT
CTCCTCCTTTTCCGTTGTGG

Product: OmpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKFKFATVSLAAATLLAAGCATEQQTHTAVGTGVGAAVGAGLGNLIGGNTTGTLVGAAVGGAVGGATGYNWNAIRGKLNK
DTAGTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHTDSTGNAQYNMQLSQRRA
QSVATYLGDRGVARNRLSAEGRGQTQPVADNATEAGRTQNRRVEIFLKPIQG

Sequences:

>Translated_212_residues
MKFKFATVSLAAATLLAAGCATEQQTHTAVGTGVGAAVGAGLGNLIGGNTTGTLVGAAVGGAVGGATGYNWNAIRGKLNK
DTAGTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHTDSTGNAQYNMQLSQRRA
QSVATYLGDRGVARNRLSAEGRGQTQPVADNATEAGRTQNRRVEIFLKPIQG
>Mature_212_residues
MKFKFATVSLAAATLLAAGCATEQQTHTAVGTGVGAAVGAGLGNLIGGNTTGTLVGAAVGGAVGGATGYNWNAIRGKLNK
DTAGTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRSVLDQVAQTLGQHQDVVANVVGHTDSTGNAQYNMQLSQRRA
QSVATYLGDRGVARNRLSAEGRGQTQPVADNATEAGRTQNRRVEIFLKPIQG

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=218, Percent_Identity=39.9082568807339, Blast_Score=124, Evalue=3e-30,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=36.0655737704918, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=34.6938775510204, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21738; Mature: 21738

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKFATVSLAAATLLAAGCATEQQTHTAVGTGVGAAVGAGLGNLIGGNTTGTLVGAAVG
CCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCHHHHCCCCCCHHHHHHHHC
GAVGGATGYNWNAIRGKLNKDTAGTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRS
CCCCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEECCCEEEECCCCCEECHHHHH
VLDQVAQTLGQHQDVVANVVGHTDSTGNAQYNMQLSQRRAQSVATYLGDRGVARNRLSAE
HHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHCCCCCC
GRGQTQPVADNATEAGRTQNRRVEIFLKPIQG
CCCCCCCCCCCCHHCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKFKFATVSLAAATLLAAGCATEQQTHTAVGTGVGAAVGAGLGNLIGGNTTGTLVGAAVG
CCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHCCHHHHCCCCCCHHHHHHHHC
GAVGGATGYNWNAIRGKLNKDTAGTGTQITEQPDGSLKVNIPSQVTFDTDSATIKPSFRS
CCCCCCCCCCCHHHCCCCCCCCCCCCCEECCCCCCCEEEECCCEEEECCCCCEECHHHHH
VLDQVAQTLGQHQDVVANVVGHTDSTGNAQYNMQLSQRRAQSVATYLGDRGVARNRLSAE
HHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHCCCCCC
GRGQTQPVADNATEAGRTQNRRVEIFLKPIQG
CCCCCCCCCCCCHHCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]