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The map label for this gene is ybeY [C]

Identifier: 73540218

GI number: 73540218

Start: 556903

End: 557670

Strand: Reverse

Name: ybeY [C]

Synonym: Reut_A0512

Alternate gene names: 73540218

Gene position: 557670-556903 (Counterclockwise)

Preceding gene: 73540219

Following gene: 73540217

Centisome position: 14.65

GC content: 66.67

Gene sequence:

>768_bases
TTGAAAAACAGCAAATCGAAGTCTTCCGTAAAATCATCCGCCGTCAGCCTGACCCTGTTCGATGGTGACGGCCGCGCGCG
CAAGAGCGCCGCGCATGCCGTACGCGTGCAGTTGCCTGACGGGCGCAGCCTGACCCTGGACCTGTCGCAGGCGGCCGACG
GCGTGGTGGCCTTGCTGGCCGAACACACCGACACGCGCCAGCAGGCTGGCCTGCTGGTACGGCCCGACAACCATGATGCG
CTGTCGGTGGCCGTCACCGCGACACCGGTGGTCACCACCACGGGCACCCCCGCCACGCCGCCCGCGCTGGAGCTCGACGT
CCAGCAAGGCGACGGCATCGGCAAGCGCGCCGGCCTGCCATCGCGCAAGCAGATCGAGACGTGGGTGACGTCGGCGCTGT
ATGCCGACGCAGCGCTGACCGTGCGCTTCGTCGACGAGGAAGAAGGCCGCGCGCTGAACCGCAGCTATCGCGGCAAGGAC
TACGCGACCAATGTGCTGACCTTTGCCTACGCGGAGAGCGAGGACGACCCGGTGACCGGCGACATCGTGCTGTGCTGCCC
CGTGGTCGAGACCGAAGCGCGCGAACAGCGCAAGCCGCTCGAAGCGCACTATGCGCATCTGATCGTGCATGGCGTGCTGC
ATGCCCAAGGCTACGAGCACGAGGACGACGCCGAAGCCGAGGAAATGGAAGCGATCGAGACCGAGACGCTGCAGGCCCTT
GGTTTTGAGGATCCGTACCGCGACGACCACACACCGGTCGCGCACTGA

Upstream 100 bases:

>100_bases
GTTCACGCGCTTCTCCAGCATCGACGTCGTGCGCCACCCGCTAGTGGCCCGCATCGTCGACGCCTATGACGAATACCACG
CCCAGCACAAGGACGCGTAA

Downstream 100 bases:

>100_bases
AAACCGGGCTCGTCCACGTCTGAAGTGAGTCCGCCCGCACACAGTCGGCCGCCCCGCCGGCTGTGTCACGAGAGTAAACG
GTCTTTTAGTGTATCCTTCA

Product: unkown domain/putative metalloprotease fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKNSKSKSSVKSSAVSLTLFDGDGRARKSAAHAVRVQLPDGRSLTLDLSQAADGVVALLAEHTDTRQQAGLLVRPDNHDA
LSVAVTATPVVTTTGTPATPPALELDVQQGDGIGKRAGLPSRKQIETWVTSALYADAALTVRFVDEEEGRALNRSYRGKD
YATNVLTFAYAESEDDPVTGDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQAL
GFEDPYRDDHTPVAH

Sequences:

>Translated_255_residues
MKNSKSKSSVKSSAVSLTLFDGDGRARKSAAHAVRVQLPDGRSLTLDLSQAADGVVALLAEHTDTRQQAGLLVRPDNHDA
LSVAVTATPVVTTTGTPATPPALELDVQQGDGIGKRAGLPSRKQIETWVTSALYADAALTVRFVDEEEGRALNRSYRGKD
YATNVLTFAYAESEDDPVTGDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQAL
GFEDPYRDDHTPVAH
>Mature_255_residues
MKNSKSKSSVKSSAVSLTLFDGDGRARKSAAHAVRVQLPDGRSLTLDLSQAADGVVALLAEHTDTRQQAGLLVRPDNHDA
LSVAVTATPVVTTTGTPATPPALELDVQQGDGIGKRAGLPSRKQIETWVTSALYADAALTVRFVDEEEGRALNRSYRGKD
YATNVLTFAYAESEDDPVTGDIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQAL
GFEDPYRDDHTPVAH

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=136, Percent_Identity=50, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 27553; Mature: 27553

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSKSKSSVKSSAVSLTLFDGDGRARKSAAHAVRVQLPDGRSLTLDLSQAADGVVALLA
CCCCCCHHHHHCCEEEEEEECCCCCCHHCCCEEEEEECCCCCEEEEEHHHHCCHHEEEEH
EHTDTRQQAGLLVRPDNHDALSVAVTATPVVTTTGTPATPPALELDVQQGDGIGKRAGLP
HCCCCHHHCCEEEECCCCCEEEEEEEECCEEEECCCCCCCCCEEEEECCCCCCCCCCCCC
SRKQIETWVTSALYADAALTVRFVDEEEGRALNRSYRGKDYATNVLTFAYAESEDDPVTG
CHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHCCCCCCHHHHEEEEEEECCCCCCCCC
DIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQAL
CEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
GFEDPYRDDHTPVAH
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNSKSKSSVKSSAVSLTLFDGDGRARKSAAHAVRVQLPDGRSLTLDLSQAADGVVALLA
CCCCCCHHHHHCCEEEEEEECCCCCCHHCCCEEEEEECCCCCEEEEEHHHHCCHHEEEEH
EHTDTRQQAGLLVRPDNHDALSVAVTATPVVTTTGTPATPPALELDVQQGDGIGKRAGLP
HCCCCHHHCCEEEECCCCCEEEEEEEECCEEEECCCCCCCCCEEEEECCCCCCCCCCCCC
SRKQIETWVTSALYADAALTVRFVDEEEGRALNRSYRGKDYATNVLTFAYAESEDDPVTG
CHHHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHCCCCCCHHHHEEEEEEECCCCCCCCC
DIVLCCPVVETEAREQRKPLEAHYAHLIVHGVLHAQGYEHEDDAEAEEMEAIETETLQAL
CEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
GFEDPYRDDHTPVAH
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA