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The map label for this gene is srpC [H]

Identifier: 73540112

GI number: 73540112

Start: 443976

End: 445478

Strand: Reverse

Name: srpC [H]

Synonym: Reut_A0406

Alternate gene names: 73540112

Gene position: 445478-443976 (Counterclockwise)

Preceding gene: 73540113

Following gene: 73540103

Centisome position: 11.7

GC content: 68.53

Gene sequence:

>1503_bases
ATGCGTTCCCGTCTTCCATTACTAGCCTGCCTGCTGCTTTCGGCGTGCGCGGTCGGCCCCGATTTCCGTGCGCCGGCACC
AACCGATGATCCCGGTTACGTAGCCGGCCCGCAGCCGCAATCCACGGTCGCCGCCGAGATGCCCGGCAACCTGCCGCACG
GCCACCCGCAGACCTTCGCCAACGGCGCCGACGTGCCCGCGCAATGGTGGGCGCTGTTCCGCAGTCCCGCGCTGGATGCG
ACGATTCGCGCTGCACTCGATGGCAGTCCCACGCTCGCGCAGGCACAGGCGAAACTGCGCGAGGCGCAGGAAAACCTTGC
TGCGCGCACCGGCGCCACGCGCTGGCCGACCGTGGATGCGAACCTCAACACGACGCGCCAGCAGGTCAACTTCCAGTCGC
TCGGCATCACCGCCATTCCGAGTCCCGGCCCGTTCACGCTTTACGGCGCGACGGTGCAGGTCTCGTACGTACTCGATCTG
TTCGGCGGACAGCGGCGCGAGCTCGAAGGCCTGCAGGCAGCGGTGGATTACCAGCGCTATGAATTCGAGGCCGCCCGCCT
TGCACTGGCCGCCAATGTCGCCACGGCGGCGATCCGGGAAGCGGGATTGCGCGCGCAACTGGCCGATACGGTCGCCATTG
CCGAGGCGCAGCAACGCGAACTCGGCATCGCCGAGGAACGGCTGCGCACCGGCGGCATCGCGCGCGTCGACGTGCAGCGC
CAGCGTTCCGAACTCGCGCAGACGCAGGCACTGATTCCGGGGCTCGCACAGCAGATCGAGTCCACGCGCCACCAGCTTGC
GGTCTATACGGGCCAGACGCCTGCGGCGGCGCAATTGCCGGAATTCAGGCTTGAAGACTTGCAGTTGCCGGAGACCTTGC
CAGTCAGCCTGCCGTCCACACTTGCGCGCCGCCGTCCGGATATCCGCGCGGCTGAAGCGCTGCTGCACCAGGCCTCGGCA
AATATCGGCGTGGCCACGGCCAACCTCTATCCGCAGATCACGCTCAGCGCGAGCGGTGGCTGGCAGTCCACCACCGCTCG
CAATCTGTTCGACAGCTTCAACGTCTGGAGCCTTGCCGCCGGCCTTGTGCAACCTGTTTTCCACGGTGGCGAACTGCTGG
CGCGCAAGCGTGCGTCGGAAGCGGCCTACGAGCAGTCGCTCGCGGCTTACCACCAGGCCATTCTGCTAGGCCTGCAGAAC
GTGGCCGACGCGCTGCGCGCGCTCGAGGCCGACGCCGCCACGCTACGCGCCCGCGCGGACAATGCGCGGCAGGCGCGTGC
AACGCTGGATATCGTGTCGCAGCAGTACCGGCTCGGCGGTGTGAGCCAGCTCACGCTGCTCGATGCGGAGCGCCAGTCGC
GCCAGGCATCGCTGGACCTGTCACAGGCGACCGCAAGCCGGCTCGCCGATTCGGCGGCGCTGCTGCAGGCGCTCGGCGGC
GGATGGTGGGAGGAGGAGGCGCAGGCCAGCGCAGGAAGTCCCTCTACGCCGGCCGTGCAGTGA

Upstream 100 bases:

>100_bases
GTTGTGGCCCAATGTGTGGCCGATGGCCCTGTTCATCGTGGTGGTGATGGCGATCGCGGTGCGCTTCTACCGCCGCACGC
TGGACTGAAGGAGCCACGCC

Downstream 100 bases:

>100_bases
CAGTCCGCAGGCTCAGCGCCCGATGAACCCGCGCAGGCGCCGCACGCCTTCATCGAGGCGATCCGTGTCGCACGCATAGC
ACCAGCGCACGAAGCCCTCC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MRSRLPLLACLLLSACAVGPDFRAPAPTDDPGYVAGPQPQSTVAAEMPGNLPHGHPQTFANGADVPAQWWALFRSPALDA
TIRAALDGSPTLAQAQAKLREAQENLAARTGATRWPTVDANLNTTRQQVNFQSLGITAIPSPGPFTLYGATVQVSYVLDL
FGGQRRELEGLQAAVDYQRYEFEAARLALAANVATAAIREAGLRAQLADTVAIAEAQQRELGIAEERLRTGGIARVDVQR
QRSELAQTQALIPGLAQQIESTRHQLAVYTGQTPAAAQLPEFRLEDLQLPETLPVSLPSTLARRRPDIRAAEALLHQASA
NIGVATANLYPQITLSASGGWQSTTARNLFDSFNVWSLAAGLVQPVFHGGELLARKRASEAAYEQSLAAYHQAILLGLQN
VADALRALEADAATLRARADNARQARATLDIVSQQYRLGGVSQLTLLDAERQSRQASLDLSQATASRLADSAALLQALGG
GWWEEEAQASAGSPSTPAVQ

Sequences:

>Translated_500_residues
MRSRLPLLACLLLSACAVGPDFRAPAPTDDPGYVAGPQPQSTVAAEMPGNLPHGHPQTFANGADVPAQWWALFRSPALDA
TIRAALDGSPTLAQAQAKLREAQENLAARTGATRWPTVDANLNTTRQQVNFQSLGITAIPSPGPFTLYGATVQVSYVLDL
FGGQRRELEGLQAAVDYQRYEFEAARLALAANVATAAIREAGLRAQLADTVAIAEAQQRELGIAEERLRTGGIARVDVQR
QRSELAQTQALIPGLAQQIESTRHQLAVYTGQTPAAAQLPEFRLEDLQLPETLPVSLPSTLARRRPDIRAAEALLHQASA
NIGVATANLYPQITLSASGGWQSTTARNLFDSFNVWSLAAGLVQPVFHGGELLARKRASEAAYEQSLAAYHQAILLGLQN
VADALRALEADAATLRARADNARQARATLDIVSQQYRLGGVSQLTLLDAERQSRQASLDLSQATASRLADSAALLQALGG
GWWEEEAQASAGSPSTPAVQ
>Mature_500_residues
MRSRLPLLACLLLSACAVGPDFRAPAPTDDPGYVAGPQPQSTVAAEMPGNLPHGHPQTFANGADVPAQWWALFRSPALDA
TIRAALDGSPTLAQAQAKLREAQENLAARTGATRWPTVDANLNTTRQQVNFQSLGITAIPSPGPFTLYGATVQVSYVLDL
FGGQRRELEGLQAAVDYQRYEFEAARLALAANVATAAIREAGLRAQLADTVAIAEAQQRELGIAEERLRTGGIARVDVQR
QRSELAQTQALIPGLAQQIESTRHQLAVYTGQTPAAAQLPEFRLEDLQLPETLPVSLPSTLARRRPDIRAAEALLHQASA
NIGVATANLYPQITLSASGGWQSTTARNLFDSFNVWSLAAGLVQPVFHGGELLARKRASEAAYEQSLAAYHQAILLGLQN
VADALRALEADAATLRARADNARQARATLDIVSQQYRLGGVSQLTLLDAERQSRQASLDLSQATASRLADSAALLQALGG
GWWEEEAQASAGSPSTPAVQ

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=510, Percent_Identity=27.6470588235294, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI2367348, Length=433, Percent_Identity=27.2517321016166, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 53271; Mature: 53271

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRLPLLACLLLSACAVGPDFRAPAPTDDPGYVAGPQPQSTVAAEMPGNLPHGHPQTFA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
NGADVPAQWWALFRSPALDATIRAALDGSPTLAQAQAKLREAQENLAARTGATRWPTVDA
CCCCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
NLNTTRQQVNFQSLGITAIPSPGPFTLYGATVQVSYVLDLFGGQRRELEGLQAAVDYQRY
CCCCHHHHCCHHHCCEEECCCCCCEEEEECCEEEEHHHHHHCCCHHHHHHHHHHHHHHHH
EFEAARLALAANVATAAIREAGLRAQLADTVAIAEAQQRELGIAEERLRTGGIARVDVQR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEHHHH
QRSELAQTQALIPGLAQQIESTRHQLAVYTGQTPAAAQLPEFRLEDLQLPETLPVSLPST
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHCCCCHHHHHCCCCCCCCCCCHHH
LARRRPDIRAAEALLHQASANIGVATANLYPQITLSASGGWQSTTARNLFDSFNVWSLAA
HHHCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHH
GLVQPVFHGGELLARKRASEAAYEQSLAAYHQAILLGLQNVADALRALEADAATLRARAD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NARQARATLDIVSQQYRLGGVSQLTLLDAERQSRQASLDLSQATASRLADSAALLQALGG
CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
GWWEEEAQASAGSPSTPAVQ
CCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRSRLPLLACLLLSACAVGPDFRAPAPTDDPGYVAGPQPQSTVAAEMPGNLPHGHPQTFA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
NGADVPAQWWALFRSPALDATIRAALDGSPTLAQAQAKLREAQENLAARTGATRWPTVDA
CCCCCHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
NLNTTRQQVNFQSLGITAIPSPGPFTLYGATVQVSYVLDLFGGQRRELEGLQAAVDYQRY
CCCCHHHHCCHHHCCEEECCCCCCEEEEECCEEEEHHHHHHCCCHHHHHHHHHHHHHHHH
EFEAARLALAANVATAAIREAGLRAQLADTVAIAEAQQRELGIAEERLRTGGIARVDVQR
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEHHHH
QRSELAQTQALIPGLAQQIESTRHQLAVYTGQTPAAAQLPEFRLEDLQLPETLPVSLPST
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHCCCCHHHHHCCCCCCCCCCCHHH
LARRRPDIRAAEALLHQASANIGVATANLYPQITLSASGGWQSTTARNLFDSFNVWSLAA
HHHCCCCHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHHCCCHHHHHH
GLVQPVFHGGELLARKRASEAAYEQSLAAYHQAILLGLQNVADALRALEADAATLRARAD
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NARQARATLDIVSQQYRLGGVSQLTLLDAERQSRQASLDLSQATASRLADSAALLQALGG
CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
GWWEEEAQASAGSPSTPAVQ
CCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]