Click here to switch to the map view.

The map label for this gene is ytfH [C]

Identifier: 73539941

GI number: 73539941

Start: 259592

End: 260110

Strand: Direct

Name: ytfH [C]

Synonym: Reut_A0235

Alternate gene names: 73539941

Gene position: 259592-260110 (Clockwise)

Preceding gene: 73539936

Following gene: 73539943

Centisome position: 6.82

GC content: 66.47

Gene sequence:

>519_bases
ATGCAAAGAAAGACCTTCCGGGACATGCAATGTCCCATCGCACGCAGCCTGGAGCGGGTCGGGGAGTGGTGGAGCATCCT
GATCCTGCGCGAGGCGTTCTATGGCACGACCCGCTTCGACGCCTTCCAGAAGAACCTCGACATTGCGCCGAACATGCTGA
CGCGCCGCCTCAACGGACTGGTGGATGAAGGCTTGCTGGAGCGCCGCCAGTATTCGGAGCGGCCGCCGCGCTACGAATAC
GTGCTGACCGAGTGCGGCCGCGATTTCGAGCCGGTGATGTTGTCGATGCTGGCCTGGGGCAACAAACACTTCGCCCCCGA
GGGGGTGAGCGTGCAGCTTGTCGACAAGGCGACTGGGGCGCCCATCGAACCCGTACTGGTCGATGCCGCGAGCGGCGCGC
CCGTTGACCTCGCGCGTTACGCGCTGGCACCCGGGCCCGCTGCCGGCGAAGGCGTGCGCCGGCGCCTGGCCGATGCCGCC
GCCTACCTGTCGACCACGGAAAAGGCCGAAGCCGACTAA

Upstream 100 bases:

>100_bases
CGTTCACCCATGAGCCGGGTCTCACTTGCATGATTAAACCCTCGGCAGTAGCATGCTCCTCACACGGGCACGAAGCTGCC
CTTAGCCATTGCCGACCACC

Downstream 100 bases:

>100_bases
GGCGACGCGGCGCTTTCTCCCCTGATTCTTACCAGCCGCCACCCAGCGCGCGGAACGCCGCCACTGCGGCGCGTGCGTTA
TCGGTGCCCGCGCGTGCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MQRKTFRDMQCPIARSLERVGEWWSILILREAFYGTTRFDAFQKNLDIAPNMLTRRLNGLVDEGLLERRQYSERPPRYEY
VLTECGRDFEPVMLSMLAWGNKHFAPEGVSVQLVDKATGAPIEPVLVDAASGAPVDLARYALAPGPAAGEGVRRRLADAA
AYLSTTEKAEAD

Sequences:

>Translated_172_residues
MQRKTFRDMQCPIARSLERVGEWWSILILREAFYGTTRFDAFQKNLDIAPNMLTRRLNGLVDEGLLERRQYSERPPRYEY
VLTECGRDFEPVMLSMLAWGNKHFAPEGVSVQLVDKATGAPIEPVLVDAASGAPVDLARYALAPGPAAGEGVRRRLADAA
AYLSTTEKAEAD
>Mature_172_residues
MQRKTFRDMQCPIARSLERVGEWWSILILREAFYGTTRFDAFQKNLDIAPNMLTRRLNGLVDEGLLERRQYSERPPRYEY
VLTECGRDFEPVMLSMLAWGNKHFAPEGVSVQLVDKATGAPIEPVLVDAASGAPVDLARYALAPGPAAGEGVRRRLADAA
AYLSTTEKAEAD

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 19218; Mature: 19218

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRKTFRDMQCPIARSLERVGEWWSILILREAFYGTTRFDAFQKNLDIAPNMLTRRLNGL
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
VDEGLLERRQYSERPPRYEYVLTECGRDFEPVMLSMLAWGNKHFAPEGVSVQLVDKATGA
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
PIEPVLVDAASGAPVDLARYALAPGPAAGEGVRRRLADAAAYLSTTEKAEAD
CCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHCCCC
>Mature Secondary Structure
MQRKTFRDMQCPIARSLERVGEWWSILILREAFYGTTRFDAFQKNLDIAPNMLTRRLNGL
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
VDEGLLERRQYSERPPRYEYVLTECGRDFEPVMLSMLAWGNKHFAPEGVSVQLVDKATGA
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCC
PIEPVLVDAASGAPVDLARYALAPGPAAGEGVRRRLADAAAYLSTTEKAEAD
CCCCEEEECCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]