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The map label for this gene is ybgK [H]

Identifier: 73539794

GI number: 73539794

Start: 107031

End: 108050

Strand: Direct

Name: ybgK [H]

Synonym: Reut_A0088

Alternate gene names: 73539794

Gene position: 107031-108050 (Clockwise)

Preceding gene: 73539793

Following gene: 73539795

Centisome position: 2.81

GC content: 71.18

Gene sequence:

>1020_bases
GTGATCGAGATCATCCGACCGGGTGCGCTGGCTTCCGTACAAGACCTCGGCCGCACCGGCTTTCGCCGCTTCGGCGTCGG
ACGCTCCGGCGCCATGGACCCGCTGGCGCTGACCATCGGCAACCGGCTGCTCGGCAATGCGCCGGGCAGCGCCGCCATTG
AATTCACGCTCGGCCGCGCGGCCGTGCGTTTTCATGAAGACCTGCGCGTGGCGCTGACCGGCGCCGAGTGCAATGCCAAC
CTCGACGGCGTGCCGGTGTGGTCGTGGCATGCCTTCGACGTCCGCCGCGGCGAGACGCTGACGCTCCCCCCGACGCGCGG
GGGCACGCGCGTCTACCTGTGCGTGGCTGGCGGCATCGACGTGGAGCCCGTGATGGGCTCGCGCAGCACCGACCTGAAGG
CTGGCTTCGGCGGGTTTGCAGGTCGCGCGCTGCACGACGGCGATCGCCTTGCCGCGGCACGCCCCGGCCTGGCCGCCAGT
TCGGACTGGCTCGGCGTGCAGGCTCCGGCGTGGGCGCTGCGGTGCACCGATTCCGGCAATGCTGTACCGATCCGTCTGCT
GCCCGGCCCCGAGTACGACGATTTCGAACCCGCCGCGCAGGCCGCGCTGTGGGAGTCCGAGTGGATCATCACGCCGAACA
GCAACCGCATGGGCCTGCGCCTGCAGGGGCCTGCGCTTGCACGCAGGGCCGACCGCAGCGCTGACCTGCTTTCGCACGGC
GTGGTGCCAGGCGTGATTCAGGTGCCGCCCGCCGGCCAGCCGATCGCGCTGATGGCCGATGCGCAGACCACCGGCGGCTA
CCCGAAAATCGGCGTCGTGATCGGCGCCGACCTGTGGCGCCTGGCGCAGGTGCCGCTCGGCGCGCCGGTACGTTTCGTGC
GCGTCACGCTGGAAGAAGCCACCAATGCACAGGCAGCCGTGGACCGCTACCTGCGCCAGATTGACCAGGCCCTGCAATGG
CAGGGAGATGGCATGACCATTGCCGCGCGCCGCCGCACCGGCTCGCGCGCCGCAGCCTGA

Upstream 100 bases:

>100_bases
TCGGGCGTACCGATGCCGCGCTGTTCGTGGCGGACCGCGATCCGCCTTCCTTGTTCGCCCCCGGCGACACGGTGCGCTTT
ATTGCCGAGGAGGTCATCGC

Downstream 100 bases:

>100_bases
AGGAGAAACGCAATGCAGATCGATTTGAACGCCGACCTTGGTGAAGGCTGCGGCAATGACGAGGCGCTGCTCGCGCTGAT
CAGTTCCGCCAACGTGGCGT

Product: allophanate hydrolase subunit 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MIEIIRPGALASVQDLGRTGFRRFGVGRSGAMDPLALTIGNRLLGNAPGSAAIEFTLGRAAVRFHEDLRVALTGAECNAN
LDGVPVWSWHAFDVRRGETLTLPPTRGGTRVYLCVAGGIDVEPVMGSRSTDLKAGFGGFAGRALHDGDRLAAARPGLAAS
SDWLGVQAPAWALRCTDSGNAVPIRLLPGPEYDDFEPAAQAALWESEWIITPNSNRMGLRLQGPALARRADRSADLLSHG
VVPGVIQVPPAGQPIALMADAQTTGGYPKIGVVIGADLWRLAQVPLGAPVRFVRVTLEEATNAQAAVDRYLRQIDQALQW
QGDGMTIAARRRTGSRAAA

Sequences:

>Translated_339_residues
MIEIIRPGALASVQDLGRTGFRRFGVGRSGAMDPLALTIGNRLLGNAPGSAAIEFTLGRAAVRFHEDLRVALTGAECNAN
LDGVPVWSWHAFDVRRGETLTLPPTRGGTRVYLCVAGGIDVEPVMGSRSTDLKAGFGGFAGRALHDGDRLAAARPGLAAS
SDWLGVQAPAWALRCTDSGNAVPIRLLPGPEYDDFEPAAQAALWESEWIITPNSNRMGLRLQGPALARRADRSADLLSHG
VVPGVIQVPPAGQPIALMADAQTTGGYPKIGVVIGADLWRLAQVPLGAPVRFVRVTLEEATNAQAAVDRYLRQIDQALQW
QGDGMTIAARRRTGSRAAA
>Mature_339_residues
MIEIIRPGALASVQDLGRTGFRRFGVGRSGAMDPLALTIGNRLLGNAPGSAAIEFTLGRAAVRFHEDLRVALTGAECNAN
LDGVPVWSWHAFDVRRGETLTLPPTRGGTRVYLCVAGGIDVEPVMGSRSTDLKAGFGGFAGRALHDGDRLAAARPGLAAS
SDWLGVQAPAWALRCTDSGNAVPIRLLPGPEYDDFEPAAQAALWESEWIITPNSNRMGLRLQGPALARRADRSADLLSHG
VVPGVIQVPPAGQPIALMADAQTTGGYPKIGVVIGADLWRLAQVPLGAPVRFVRVTLEEATNAQAAVDRYLRQIDQALQW
QGDGMTIAARRRTGSRAAA

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=314, Percent_Identity=50.6369426751592, Blast_Score=289, Evalue=2e-79,
Organism=Saccharomyces cerevisiae, GI6319685, Length=323, Percent_Identity=31.8885448916409, Blast_Score=144, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 35876; Mature: 35876

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIIRPGALASVQDLGRTGFRRFGVGRSGAMDPLALTIGNRLLGNAPGSAAIEFTLGRA
CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHCCCCCCEEEEEEECHH
AVRFHEDLRVALTGAECNANLDGVPVWSWHAFDVRRGETLTLPPTRGGTRVYLCVAGGID
EEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEECCCCCCCEEEEEEECCCE
VEPVMGSRSTDLKAGFGGFAGRALHDGDRLAAARPGLAASSDWLGVQAPAWALRCTDSGN
ECCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCC
AVPIRLLPGPEYDDFEPAAQAALWESEWIITPNSNRMGLRLQGPALARRADRSADLLSHG
EEEEEEECCCCCCCCCHHHHHHEECCCEEECCCCCEEEEEECCHHHHHHCCCHHHHHHCC
VVPGVIQVPPAGQPIALMADAQTTGGYPKIGVVIGADLWRLAQVPLGAPVRFVRVTLEEA
CCCCEEECCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEEEEEEHHC
TNAQAAVDRYLRQIDQALQWQGDGMTIAARRRTGSRAAA
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MIEIIRPGALASVQDLGRTGFRRFGVGRSGAMDPLALTIGNRLLGNAPGSAAIEFTLGRA
CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHCCCCCCEEEEEEECHH
AVRFHEDLRVALTGAECNANLDGVPVWSWHAFDVRRGETLTLPPTRGGTRVYLCVAGGID
EEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEECCCCCCCEEEEEEECCCE
VEPVMGSRSTDLKAGFGGFAGRALHDGDRLAAARPGLAASSDWLGVQAPAWALRCTDSGN
ECCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCC
AVPIRLLPGPEYDDFEPAAQAALWESEWIITPNSNRMGLRLQGPALARRADRSADLLSHG
EEEEEEECCCCCCCCCHHHHHHEECCCEEECCCCCEEEEEECCHHHHHHCCCHHHHHHCC
VVPGVIQVPPAGQPIALMADAQTTGGYPKIGVVIGADLWRLAQVPLGAPVRFVRVTLEEA
CCCCEEECCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEEEEEEHHC
TNAQAAVDRYLRQIDQALQWQGDGMTIAARRRTGSRAAA
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]