Click here to switch to the map view.

The map label for this gene is nisX1 [H]

Identifier: 71910940

GI number: 71910940

Start: 1103462

End: 1103758

Strand: Direct

Name: nisX1 [H]

Synonym: M5005_Spy_1127

Alternate gene names: 71910940

Gene position: 1103462-1103758 (Clockwise)

Preceding gene: 71910939

Following gene: 71910941

Centisome position: 60.02

GC content: 38.38

Gene sequence:

>297_bases
TTGAATAGTCATCACACCTGTCAAACTCTTCAAGTCTCCCGTTCAGGTTTCTATGCTTATTTAAAACGTCGTCCCTCTTC
AAGGCATGTTGAGAATGAAGCTTTAAAGGAAATGATTAAAGCCATTTTCTATGAACATAAAGAGCGTTACGGAAGTGTAC
GAATTACCCAAGAACTTTGTAGACGTGGCATCCATGTCAATTATAAACGTGTTGGTAGACTCCTTCATCAGCTAGGTCTC
TATGCTAAAGGAAGTCGATATCAATATAAATACTATAACCGTCGACGTTCTTCATGA

Upstream 100 bases:

>100_bases
AACTGCTACAGGAGGAATTAGCTCTTCTAAAAAAGTTCCAGGTCTTTTTGAAGCCAAACCGGAAATAAAATTTCAGCTTC
TGAAGGAAAATAGTGTTAGC

Downstream 100 bases:

>100_bases
ACTCGTCCCAATCTTGTTAATCAATGTTTCCAAGCGACTGGTAAGAATAAATTATGGCTAGGAGACCTAACCTACATTCC
TACACAAGAAGGAATACTTT

Product: transposase pseudogene

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MNSHHTCQTLQVSRSGFYAYLKRRPSSRHVENEALKEMIKAIFYEHKERYGSVRITQELCRRGIHVNYKRVGRLLHQLGL
YAKGSRYQYKYYNRRRSS

Sequences:

>Translated_98_residues
MNSHHTCQTLQVSRSGFYAYLKRRPSSRHVENEALKEMIKAIFYEHKERYGSVRITQELCRRGIHVNYKRVGRLLHQLGL
YAKGSRYQYKYYNRRRSS
>Mature_98_residues
MNSHHTCQTLQVSRSGFYAYLKRRPSSRHVENEALKEMIKAIFYEHKERYGSVRITQELCRRGIHVNYKRVGRLLHQLGL
YAKGSRYQYKYYNRRRSS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 11856; Mature: 11856

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSHHTCQTLQVSRSGFYAYLKRRPSSRHVENEALKEMIKAIFYEHKERYGSVRITQELC
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RRGIHVNYKRVGRLLHQLGLYAKGSRYQYKYYNRRRSS
HCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MNSHHTCQTLQVSRSGFYAYLKRRPSSRHVENEALKEMIKAIFYEHKERYGSVRITQELC
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
RRGIHVNYKRVGRLLHQLGLYAKGSRYQYKYYNRRRSS
HCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]