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The map label for this gene is ybiS [H]

Identifier: 71892403

GI number: 71892403

Start: 502631

End: 503071

Strand: Direct

Name: ybiS [H]

Synonym: BPEN_424

Alternate gene names: 71892403

Gene position: 502631-503071 (Clockwise)

Preceding gene: 71892190

Following gene: 71892192

Centisome position: 63.49

GC content: 28.34

Gene sequence:

>949_bases
ATGAATACAACAATATATTTTTATAATATAATATTTTTTATTATTGGTTTACATCAGTATTTAGCTACTGCTACTGTTTA
TACATTACCTGATCACAATAACAGACTAATAGGCGAAAATATTGAAATTATCACACCTAAAAACAATACATATTCTCTTG
AATATTTTTCTGCACAATTTCAAGTAGGAATGAGTAACATGTTAGAAGCTAATCCTGACGTCGATGTATATCTTCCAGAT
TCAGAAAAAAAATTAATAATTCCACATCAATTAATTTTACCAAATACGCCTCATTCAGGCATTGTTATTAACAACGCTGA
AATGCGGTTATACTATTATCCTGAAAAAAAAAATACTGTAATTGTGTTACCGATAGCTATCGGGACCATTAAAAATGCAA
CACCATCACATTGGATAACCTCAATAACACATAAAAAAAAATCCAATTTGGATCCCTACCAAAAGTATGCGTGATGAATA
CATTAAACATGGAGAAATCCTACCTACCATATTTCCGGCTGGCTCTAGTAATCCTATGGGGCTGTATGCTTTATACTTAG
AAAAAAATTACGCAATCCACGGCACCAATAGGAATTTCGGAATCGGCCTTAGAATAACTCGAGGCTGCATAAGATTACGC
CCTGAAGATATTGAATACTTATTCAACATTGTCCCCGTCGGTACTAAAGTACAATTTATAAATGAACCTGTGAAAAGTAC
TGTTGAAAAAAATGGTATGCGGTATTTAGAGATTCATAATCCGTTATCTTGTAACAAAGACAAAAAAAGATCAGAAGCAT
CGATAATAGCGCATTTAGAACAACAAATACGATCTATATTAATAAACGATTCCAACGTAGATTATGAAATAATTAACAAA
GCATTAAAAGATCGTTCCGGTATACCGATAAACATTACACGTAAACTTACCAACAATGAAAACAAATAA

Upstream 100 bases:

>100_bases
CAATTAAACGTTCCTAAAAATTTTTTCAATAATTTCTACAACGCTATTAATCATAATATATAAATAACAAAACACATATT
TTTAAACAATGTAAATAAAT

Downstream 100 bases:

>100_bases
TTATTATAAATAACTATCCATATTAAACATAATGGCATTGCACTTCAAACACATACTAGCAATTATCAAATCAATTTATT
TTTGAATAAAAACCATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>315_residues
MNTTIYFYNIIFFIIGLHQYLATATVYTLPDHNNRLIGENIEIITPKNNTYSLEYFSAQFQVGMSNMLEANPDVDVYLPD
SEKKLIIPHQLILPNTPHSGIVINNAEMRLYYYPEKKNTVIVLPIAIGTIKNATPSHWITSITHKKKPIWIPTKSMRDEY
IKHGEILPTIFPAGSSNPMGLYALYLEKNYAIHGTNRNFGIGLRITRGCIRLRPEDIEYLFNIVPVGTKVQFINEPVKST
VEKNGMRYLEIHNPLSCNKDKKRSEASIIAHLEQQIRSILINDSNVDYEIINKALKDRSGIPINITRKLTNNENK

Sequences:

>Translated_147_residues
MNTTIYFYNIIFFIIGLHQYLATATVYTLPDHNNRLIGENIEIITPKNNTYSLEYFSAQFQVGMSNMLEANPDVDVYLPD
SEKKLIIPHQLILPNTPHSGIVINNAEMRLYYYPEKKNTVIVLPIAIGTIKNATPSHWITSITHKKK
>Mature_147_residues
MNTTIYFYNIIFFIIGLHQYLATATVYTLPDHNNRLIGENIEIITPKNNTYSLEYFSAQFQVGMSNMLEANPDVDVYLPD
SEKKLIIPHQLILPNTPHSGIVINNAEMRLYYYPEKKNTVIVLPIAIGTIKNATPSHWITSITHKKK

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=140, Percent_Identity=52.1428571428571, Blast_Score=152, Evalue=7e-39,
Organism=Escherichia coli, GI1788299, Length=138, Percent_Identity=47.1014492753623, Blast_Score=140, Evalue=2e-35,
Organism=Escherichia coli, GI1787356, Length=121, Percent_Identity=42.9752066115703, Blast_Score=98, Evalue=2e-22,
Organism=Escherichia coli, GI1787968, Length=114, Percent_Identity=38.5964912280702, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 16853; Mature: 16853

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTIYFYNIIFFIIGLHQYLATATVYTLPDHNNRLIGENIEIITPKNNTYSLEYFSAQF
CCCEEEHHHHHHHHHHHHHHHHEEEEEECCCCCCEEECCCEEEECCCCCEEEEEEEEEEE
QVGMSNMLEANPDVDVYLPDSEKKLIIPHQLILPNTPHSGIVINNAEMRLYYYPEKKNTV
EECCHHHHCCCCCEEEEECCCCCEEECCEEEEECCCCCCCEEEECCEEEEEECCCCCCEE
IVLPIAIGTIKNATPSHWITSITHKKK
EEEEEEEECCCCCCCCHHEEEEECCCC
>Mature Secondary Structure
MNTTIYFYNIIFFIIGLHQYLATATVYTLPDHNNRLIGENIEIITPKNNTYSLEYFSAQF
CCCEEEHHHHHHHHHHHHHHHHEEEEEECCCCCCEEECCCEEEECCCCCEEEEEEEEEEE
QVGMSNMLEANPDVDVYLPDSEKKLIIPHQLILPNTPHSGIVINNAEMRLYYYPEKKNTV
EECCHHHHCCCCCEEEEECCCCCEEECCEEEEECCCCCCCEEEECCEEEEEECCCCCCEE
IVLPIAIGTIKNATPSHWITSITHKKK
EEEEEEEECCCCCCCCHHEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]