| Definition | Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome. |
|---|---|
| Accession | NC_007292 |
| Length | 791,654 |
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The map label for this gene is rne [H]
Identifier: 71892189
GI number: 71892189
Start: 498327
End: 500927
Strand: Direct
Name: rne [H]
Synonym: BPEN_422
Alternate gene names: 71892189
Gene position: 498327-500927 (Clockwise)
Preceding gene: 71892172
Following gene: 71892190
Centisome position: 62.95
GC content: 31.87
Gene sequence:
>2601_bases ATGAAAAGAATGTTAATTAACGCTACTCAACAAGAAGAATTACGGGTAGCATTAGTAGATGGGCAACGATTATATGATCT AGATATTGAAACAGTAGGTCATGAACAAAAGAAATCAAATATTTATAAAGGAAAAATTATCCGAATTGAACCTAGTTTAG AAGCAGTATTTGTAGATTATGGAGTCGAACGACACGGATTTCTTCCTATAAAAGAAATCTCACACGAATATTTTCTTTCT TCGCCATCTTCCTATAATAAGTTCAATATTAAGGAAATTTTATGTGAAGGACAAGAACTAATTGTACAAATAGATAAAGA AGAAAGAGGAAATAAAGGCGCTGCATTAACTACTTTTATCAGTCTAGCAGGTAGCTATTTAGTGCTCATGCCAAATAATC CCAAATCCAGTGGAATCTCAAGACGAATTGAGGGAAACGATCGTATCGGATTAAAAGAAATTCTATCTACTTTAGAATTA CCTGAAGGAATGAGTTTAATTATTCGTACCGCTGGGCTGGGAAAATCTATCGAGGCATTAGAATGGGATTTAACTTCTCG TTTGCAACATTGGAAAACCATCAAAAATACCGCAGCAAAGCACTTGGCTCCTTTTTTAATTCATCAGGATAGTAATGTTA TTGTACGTGCATTTCGAGATTATTTACGCCCAGATATAGGAGAAATTTTAATTGATAATCCCAAAATTATGCATTTAGCT AAAGAACATATAACTTCTTTAGGTCGCCCAGATTTCACTAAAAAAATAAAATTTTATAATGGCGATATTCCTTTATTTAG TCACTACCAGATAGAATCTCAAATAGAATCAGCGTTTCAACGAGAAGTAAGATTACCATCTGGAGGCTCCATTGTTATAG ACACTACCGAAGCTCTAACAGCAATCGATATTAATTCCGCACGCTCTACTAAAGGAACAGACATTGAAGATACAGCTTTT CATACCAATTTAGAAGCAACTGATGAAATAGCGCGTCAGTTACGTCTTCGTGATGTGGGTGGATTAATTGTTATAGATTT CATAGACATGACTCCAATTCGGCATCAACGAGAAATTGAAAATAGCTTAAAAATAGCGGTGCATCAGGATCGCGCCCGCA TTCAGATAGGACATATTTCTAAATTTGGTCTATTAGAGCTATCTAGACAAAGATTAAGTACGTCGCTTGGAGAATCAAGT CATCATATTTGCCCACGTTGCAGCGGAACAGGCAGCATTCGTGACAATGAATCTCTTTCTCTATCAATTTTACGTTTAAT TGAAGAAGAAGCACTAAAGGATAATACTTATGAAGTACATGCTATCGTTCCTGTAGCTATCGCCTCATATTTACTCAATG AAAAACGAAAAGCCATTAGCGATATAGAACAACGACAAAAAGGAGTACGTGCCATTATAGTACCTTATGAACAAATGAAA ACTCCAAATTACGAAATACGACGTATACGTAAAGGAGAAACATACAATAAACCAAGCTATTTGTTAGCAACAAATCAAGA CTATGAAATAACCCAATCATCAGGAGAAATGATTTCTTCAAATTATACTTATACTACAGAAAAACTACAGTCAACAGCAC GCACCTCATCAAATTTAGTACCTGATTATAATAAAATTTTTTATTATGCAAATCTCAAATTACAATTTAAATCAAAAAGA GAAATATCATGGTTTGATAAAATTAAAAATCGTTGCCATAAAATACTCAGTTTATGTATCACAAGTTATAATAATTTAAA ACAAATATTGTCAAAAATAATCACCAAAAACATTCATTGGATATACACTAAAATTATATATCAACACAAACCATCTCAGA ACGTAAATCATTTTTTCAAGTCATATCCGAATTTTTATTCTAAATATAATAGCAATAATAATAAAAAAAATTATACCCAT AATACAAAAAACAAAACTAATTTAAATAATCATAAAAAAATAACAGATTTTTTTAATAAAAATAATAGTAACAATACTAA GTCTCTATCGAAATTTAATGACAATATTTACAAGTCCATACCTACTCCCTACTACATTAATCCAACACAGTCTATTGAAA AAATAACGAAAAAACCACCTATACAGAAATATAAAAAAAGATATACGCACAACGTTAAACATCAGCACTTAAATAAGGCA CATCACTCAGAATATTGGATATGGCGAAAACTTTACCAATCTGAACACACCTTGCATATGAAAGTAAATAAAGAACCAGT AGTACCTATAAATATCAATTCCTACAGAACATATAATGCAGCAGATTCCCGCATTTTTGACAAAAAAACCACCATTGCTG AAGTAAACTCCAATACTATTGATAATTCTACAAATATTCATACCTCTGATTTGACATCAAACACTCTATATATTCCAAAA AGTACCAATACTATCATCCATTATCCACATCTTAACCATAATAGCATTGCTAAACAGCACAACAACATATCTCAACAAGA CAACAATAACCATACACAACTAATTCGGCGTATACGTCGATCTTCTCGTCATTTTCGTATAAATTTTAAATATCGGTTAC AACAACGTCGAGAAAAAATTACCTCAAAGAAAATGCAGTAA
Upstream 100 bases:
>100_bases CAAATCTATTAAACATCAAACTATAAAAACACTGAAAATAATTAGATATTTAAATCAAAATATCTACATTTCAATATATC AACATTGAGCAAAAATTATA
Downstream 100 bases:
>100_bases AATATTACTCAATAAATGTAACATAGCACTAAAATAACTCTCGAAAGTTCGTTACATACACATACCGTTCATATATCCAA ATATAATTCAAAATAAAAAC
Product: ribonuclease E
Products: NA
Alternate protein names: RNase E [H]
Number of amino acids: Translated: 866; Mature: 866
Protein sequence:
>866_residues MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYGVERHGFLPIKEISHEYFLS SPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLEL PEGMSLIIRTAGLGKSIEALEWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARSTKGTDIEDTAF HTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIENSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESS HHICPRCSGTGSIRDNESLSLSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLVPDYNKIFYYANLKLQFKSKR EISWFDKIKNRCHKILSLCITSYNNLKQILSKIITKNIHWIYTKIIYQHKPSQNVNHFFKSYPNFYSKYNSNNNKKNYTH NTKNKTNLNNHKKITDFFNKNNSNNTKSLSKFNDNIYKSIPTPYYINPTQSIEKITKKPPIQKYKKRYTHNVKHQHLNKA HHSEYWIWRKLYQSEHTLHMKVNKEPVVPININSYRTYNAADSRIFDKKTTIAEVNSNTIDNSTNIHTSDLTSNTLYIPK STNTIIHYPHLNHNSIAKQHNNISQQDNNNHTQLIRRIRRSSRHFRINFKYRLQQRREKITSKKMQ
Sequences:
>Translated_866_residues MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYGVERHGFLPIKEISHEYFLS SPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLEL PEGMSLIIRTAGLGKSIEALEWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARSTKGTDIEDTAF HTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIENSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESS HHICPRCSGTGSIRDNESLSLSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLVPDYNKIFYYANLKLQFKSKR EISWFDKIKNRCHKILSLCITSYNNLKQILSKIITKNIHWIYTKIIYQHKPSQNVNHFFKSYPNFYSKYNSNNNKKNYTH NTKNKTNLNNHKKITDFFNKNNSNNTKSLSKFNDNIYKSIPTPYYINPTQSIEKITKKPPIQKYKKRYTHNVKHQHLNKA HHSEYWIWRKLYQSEHTLHMKVNKEPVVPININSYRTYNAADSRIFDKKTTIAEVNSNTIDNSTNIHTSDLTSNTLYIPK STNTIIHYPHLNHNSIAKQHNNISQQDNNNHTQLIRRIRRSSRHFRINFKYRLQQRREKITSKKMQ >Mature_866_residues MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYGVERHGFLPIKEISHEYFLS SPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLEL PEGMSLIIRTAGLGKSIEALEWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARSTKGTDIEDTAF HTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIENSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESS HHICPRCSGTGSIRDNESLSLSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLVPDYNKIFYYANLKLQFKSKR EISWFDKIKNRCHKILSLCITSYNNLKQILSKIITKNIHWIYTKIIYQHKPSQNVNHFFKSYPNFYSKYNSNNNKKNYTH NTKNKTNLNNHKKITDFFNKNNSNNTKSLSKFNDNIYKSIPTPYYINPTQSIEKITKKPPIQKYKKRYTHNVKHQHLNKA HHSEYWIWRKLYQSEHTLHMKVNKEPVVPININSYRTYNAADSRIFDKKTTIAEVNSNTIDNSTNIHTSDLTSNTLYIPK STNTIIHYPHLNHNSIAKQHNNISQQDNNNHTQLIRRIRRSSRHFRINFKYRLQQRREKITSKKMQ
Specific function: Matures 5S rRNA from its precursors from all the rRNA genes. It also cleaves RNA I, a molecule that controls the replication of colE1 plasmid DNA. It is the major endoribonuclease participating in mRNA turnover in E.coli. It initiates the decay of RNAs by
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787325, Length=502, Percent_Identity=78.4860557768924, Blast_Score=848, Evalue=0.0, Organism=Escherichia coli, GI87082235, Length=466, Percent_Identity=33.6909871244635, Blast_Score=228, Evalue=1e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR021968 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF12111 PNPase_C; PF10150 RNase_E_G; PF00575 S1 [H]
EC number: =3.1.26.12 [H]
Molecular weight: Translated: 100472; Mature: 100472
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY CCCEEECCCCCCCEEEEEECCCEEEEECHHHCCCHHHHCCCCCCEEEEECCCCEEEEEEC GVERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFI CCCCCCCCCHHHHCHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH SLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEAL HHCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHH EWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCEEECCCHHHHHH KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT HHHHHHCCCCCCHHEEEEECCCCCEEECEEHHHHHHHHHHHHCCCCCCCEEEEECCCCEE AIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE EEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS CCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHC TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLV CCCHHHHEEECCCCCCCCCEEEEECCCCEEECCCCCEEECCCEEEHHHHHHHHHHCCCCC PDYNKIFYYANLKLQFKSKREISWFDKIKNRCHKILSLCITSYNNLKQILSKIITKNIHW CCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHH IYTKIIYQHKPSQNVNHFFKSYPNFYSKYNSNNNKKNYTHNTKNKTNLNNHKKITDFFNK EEEEHHHHCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC NNSNNTKSLSKFNDNIYKSIPTPYYINPTQSIEKITKKPPIQKYKKRYTHNVKHQHLNKA CCCCCCHHHHHHCCHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH HHSEYWIWRKLYQSEHTLHMKVNKEPVVPININSYRTYNAADSRIFDKKTTIAEVNSNTI HCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCEEECCCCCHHCCCCCEEEECCCCCC DNSTNIHTSDLTSNTLYIPKSTNTIIHYPHLNHNSIAKQHNNISQQDNNNHTQLIRRIRR CCCCCEEECCCCCCEEEEECCCCEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH SSRHFRINFKYRLQQRREKITSKKMQ CCCEEEEEEHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY CCCEEECCCCCCCEEEEEECCCEEEEECHHHCCCHHHHCCCCCCEEEEECCCCEEEEEEC GVERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFI CCCCCCCCCHHHHCHHHHCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHH SLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEAL HHCCCEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHH EWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCEEECCCHHHHHH KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT HHHHHHCCCCCCHHEEEEECCCCCEEECEEHHHHHHHHHHHHCCCCCCCEEEEECCCCEE AIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE EEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS CCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK HHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHC TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLV CCCHHHHEEECCCCCCCCCEEEEECCCCEEECCCCCEEECCCEEEHHHHHHHHHHCCCCC PDYNKIFYYANLKLQFKSKREISWFDKIKNRCHKILSLCITSYNNLKQILSKIITKNIHW CCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHH IYTKIIYQHKPSQNVNHFFKSYPNFYSKYNSNNNKKNYTHNTKNKTNLNNHKKITDFFNK EEEEHHHHCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC NNSNNTKSLSKFNDNIYKSIPTPYYINPTQSIEKITKKPPIQKYKKRYTHNVKHQHLNKA CCCCCCHHHHHHCCHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH HHSEYWIWRKLYQSEHTLHMKVNKEPVVPININSYRTYNAADSRIFDKKTTIAEVNSNTI HCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCEEECCCCCHHCCCCCEEEECCCCCC DNSTNIHTSDLTSNTLYIPKSTNTIIHYPHLNHNSIAKQHNNISQQDNNNHTQLIRRIRR CCCCCEEECCCCCCEEEEECCCCEEEECCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH SSRHFRINFKYRLQQRREKITSKKMQ CCCEEEEEEHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503; 1447789; 1704367; 2011493; 8415644 [H]