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The map label for this gene is slyA

Identifier: 71892147

GI number: 71892147

Start: 446720

End: 447154

Strand: Direct

Name: slyA

Synonym: BPEN_380

Alternate gene names: 71892147

Gene position: 446720-447154 (Clockwise)

Preceding gene: 71892145

Following gene: 71892148

Centisome position: 56.43

GC content: 29.2

Gene sequence:

>435_bases
TTGGAATCACCATTAGGATCAGATTTAGCACGCCTCGTAAGAATATGGCGTGCTTTAATTGATCATCGTTTAAAACCTTT
AAAACTTACACAAACACATTGGATTACATTGCATAATATTTGTCAATTACCTCCGGAACAATCTCAAATACAATTAGCAA
AAGCCATAGGAATAGAACAACCATCTCTAGTACGAACACTCGATCAACTTGAAGAAAAATCATTAATTATAAGACATACT
TGTCTGAATGATCGACGAGCTAAACGAATTAAATTAACTGATAACGCTAGACCTGTTATTAATGAAGTAAATCGTGTCAT
TTCTATCACTAGAAATGAAATTTTTAACGGAATTAGTAATGAGGAAACAATTTTTCTAAATAAAATTATTTCTAAATTAG
AAAAAAACATTATAAATTTACATAATAAGAATTAG

Upstream 100 bases:

>100_bases
TGATTATCGCTATAATCACACGTGTGTATATTATTATCCAATTGTCTAAAACAAATAAAATTCTAAAGTAGAGTAGACTC
AATTATAAGGAAGGAAAAAA

Downstream 100 bases:

>100_bases
AAAATATCATATAATTAAAGCATATATACCTGTTAATAACATTAAATAAATTTTATATCTTATTTTCCAGATATCGTACA
AACATCTGAGGATGTGTATC

Product: transcriptional regulator SlyA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MESPLGSDLARLVRIWRALIDHRLKPLKLTQTHWITLHNICQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKSLIIRHT
CLNDRRAKRIKLTDNARPVINEVNRVISITRNEIFNGISNEETIFLNKIISKLEKNIINLHNKN

Sequences:

>Translated_144_residues
MESPLGSDLARLVRIWRALIDHRLKPLKLTQTHWITLHNICQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKSLIIRHT
CLNDRRAKRIKLTDNARPVINEVNRVISITRNEIFNGISNEETIFLNKIISKLEKNIINLHNKN
>Mature_144_residues
MESPLGSDLARLVRIWRALIDHRLKPLKLTQTHWITLHNICQLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKSLIIRHT
CLNDRRAKRIKLTDNARPVINEVNRVISITRNEIFNGISNEETIFLNKIISKLEKNIINLHNKN

Specific function: Transcription regulator that can both activate or repress expression

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

Organism=Escherichia coli, GI87081950, Length=144, Percent_Identity=75.6944444444444, Blast_Score=215, Evalue=9e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SLYA_BLOPB (Q492T9)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277879.1
- HSSP:   Q9HYQ4
- ProteinModelPortal:   Q492T9
- SMR:   Q492T9
- GeneID:   3562645
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_380
- eggNOG:   COG1846
- HOGENOM:   HBG728159
- OMA:   DEHRFGM
- ProtClustDB:   PRK03573
- BioCyc:   CBLO291272:BPEN_380-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01819
- InterPro:   IPR000835
- InterPro:   IPR023071
- InterPro:   IPR023187
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 16706; Mature: 16706

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESPLGSDLARLVRIWRALIDHRLKPLKLTQTHWITLHNICQLPPEQSQIQLAKAIGIEQ
CCCCCHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
PSLVRTLDQLEEKSLIIRHTCLNDRRAKRIKLTDNARPVINEVNRVISITRNEIFNGISN
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
EETIFLNKIISKLEKNIINLHNKN
CHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MESPLGSDLARLVRIWRALIDHRLKPLKLTQTHWITLHNICQLPPEQSQIQLAKAIGIEQ
CCCCCHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
PSLVRTLDQLEEKSLIIRHTCLNDRRAKRIKLTDNARPVINEVNRVISITRNEIFNGISN
CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
EETIFLNKIISKLEKNIINLHNKN
CHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA