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The map label for this gene is sdhC [H]

Identifier: 71892105

GI number: 71892105

Start: 399359

End: 399766

Strand: Direct

Name: sdhC [H]

Synonym: BPEN_337

Alternate gene names: 71892105

Gene position: 399359-399766 (Clockwise)

Preceding gene: 71892104

Following gene: 71892106

Centisome position: 50.45

GC content: 25.98

Gene sequence:

>408_bases
ATGATCAAAAAAAACCAAAGACCAATATATTTAAATATCAGAACTATACGATTTCCCATTACTGCTATTACTTCTATTTT
ACACAGAATCTCCGGAATTCTGTTATTCATAATAATTGGTCCAATTCTTTGGATATTAAAATTATCTTTATCTTCTAATA
ATGAATTTTGCAAAATTCATCGGTTTCTATTAATGAATCATTACATTTTTCAGTTTGTATTTTGGACAGTTACGATCTTA
CTAAGTTATCATATAATTGCTGGTATCCGTCAAATATTAATGGATTTTGGGTGCTTAAATCAAACGTTACTAATAGGAAA
AATTAGCGCAAAAGTTGTATTTGTATTAACCATTTTGTTATCTATTTTCATTGGAATTTTAATATGGTATCCATTAAATC
AATTTTGA

Upstream 100 bases:

>100_bases
TTTATATCATATATTATCTTTTGTTTTATGATGTTTTAAGGATGTATCGTGAGTCGCGTGCAAGCATATGTTTTACCGTG
ATATATTTAAGAGCGTTTAT

Downstream 100 bases:

>100_bases
AATATCACGGAGTGTACGAATGGTTGCTAGTACGAATTTCAGCCGTCTGGATGTTGCTATACATCGTGTATATTTCTATT
TTTATTATTTCAGCTAACAA

Product: succinate dehydrogenase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MIKKNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIHRFLLMNHYIFQFVFWTVTIL
LSYHIIAGIRQILMDFGCLNQTLLIGKISAKVVFVLTILLSIFIGILIWYPLNQF

Sequences:

>Translated_135_residues
MIKKNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIHRFLLMNHYIFQFVFWTVTIL
LSYHIIAGIRQILMDFGCLNQTLLIGKISAKVVFVLTILLSIFIGILIWYPLNQF
>Mature_135_residues
MIKKNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIHRFLLMNHYIFQFVFWTVTIL
LSYHIIAGIRQILMDFGCLNQTLLIGKISAKVVFVLTILLSIFIGILIWYPLNQF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=126, Percent_Identity=46.8253968253968, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15776; Mature: 15776

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIH
CCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RFLLMNHYIFQFVFWTVTILLSYHIIAGIRQILMDFGCLNQTLLIGKISAKVVFVLTILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SIFIGILIWYPLNQF
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MIKKNQRPIYLNIRTIRFPITAITSILHRISGILLFIIIGPILWILKLSLSSNNEFCKIH
CCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
RFLLMNHYIFQFVFWTVTILLSYHIIAGIRQILMDFGCLNQTLLIGKISAKVVFVLTILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
SIFIGILIWYPLNQF
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]