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The map label for this gene is dapD

Identifier: 229558494

GI number: 229558494

Start: 322804

End: 323625

Strand: Reverse

Name: dapD

Synonym: BPEN_277

Alternate gene names: 229558494

Gene position: 323625-322804 (Counterclockwise)

Preceding gene: 71892052

Following gene: 71892050

Centisome position: 40.88

GC content: 35.52

Gene sequence:

>822_bases
ATGAATCAGTTACGAAAAATAATAGAAAGTGCTTTTGAAAAAAAAGAATATATTTCAAATAATAACATTGATTCTACCGT
CAATAATGCTGTTCGAGAAATTATGGATAGATTAGATAACGGGACGTTACGTATATCAGAAAAAATCAATGGTACATGGA
TTACGCATCAATGGCTAAAAAAAGCAATTATGCTTGCATTTCATACTATGGACAATCAATTGATAACGTGGGGGGGTGGT
GTTTTTTTTGACAAATTTCCTATGAAATTTTCCGGATGGGATCACACACGTTTTGAAAATAAAAAATTGCGTATAATTCC
ACCGGCTACTGTACGCTACGGGGCTTATATTGCTGATAACACAGTAATCATGCCTTCCTACATCAATCTTGGTGCTTATA
TTGATGTAGGAACAATGATTGATACTTGGGCTACAGTTGGATCTTGTGCTCAGATTGGAAAATATGTGCATTTATCTGGA
GGTGTGGGAATTGGAGGAGTTTTAGAACCCATTCAAACTAATCCAACCATCATTGAAGATAATTGTTTCATTGGGTCTCG
TTCTGAAATTGTAGAAGGGGTAATTGTTGAAAAAGGCGCAGTGATCTCTATGGGGGTATTTATAGGTCAAAGCACTAAAA
TATATGATCGCGCTAGCGGAAATATATACTATGGACGTGTGCCAGCTGGTTCAGTTGTCATTCCAGGTAGTCTGCCTTCT
AAAGATGGTCGTGTTAATACTTACTGTGCCGTAATCGTAAAAACAGTCGATTCTAAAACTAAAAATAAAGTTAAGATAAA
TAATTTATTACGCGACATATAA

Upstream 100 bases:

>100_bases
GATGTAAATTTCTAATATTTACTTTAATAAAGATGTTATTTTCACGGTCAATTAGAAACAATACTCTCAAATGAATTTGA
TATTATGGAATATAAAACAT

Downstream 100 bases:

>100_bases
AATATATTTTTCTTACTTGAAGTACTGTATTCTATGGTATTTTAAGTATATTGTTTAAATATTAGCATAAATGTTGTTTA
TATTTATTGGTGTGAAGTAA

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MNQLRKIIESAFEKKEYISNNNIDSTVNNAVREIMDRLDNGTLRISEKINGTWITHQWLKKAIMLAFHTMDNQLITWGGG
VFFDKFPMKFSGWDHTRFENKKLRIIPPATVRYGAYIADNTVIMPSYINLGAYIDVGTMIDTWATVGSCAQIGKYVHLSG
GVGIGGVLEPIQTNPTIIEDNCFIGSRSEIVEGVIVEKGAVISMGVFIGQSTKIYDRASGNIYYGRVPAGSVVIPGSLPS
KDGRVNTYCAVIVKTVDSKTKNKVKINNLLRDI

Sequences:

>Translated_273_residues
MNQLRKIIESAFEKKEYISNNNIDSTVNNAVREIMDRLDNGTLRISEKINGTWITHQWLKKAIMLAFHTMDNQLITWGGG
VFFDKFPMKFSGWDHTRFENKKLRIIPPATVRYGAYIADNTVIMPSYINLGAYIDVGTMIDTWATVGSCAQIGKYVHLSG
GVGIGGVLEPIQTNPTIIEDNCFIGSRSEIVEGVIVEKGAVISMGVFIGQSTKIYDRASGNIYYGRVPAGSVVIPGSLPS
KDGRVNTYCAVIVKTVDSKTKNKVKINNLLRDI
>Mature_273_residues
MNQLRKIIESAFEKKEYISNNNIDSTVNNAVREIMDRLDNGTLRISEKINGTWITHQWLKKAIMLAFHTMDNQLITWGGG
VFFDKFPMKFSGWDHTRFENKKLRIIPPATVRYGAYIADNTVIMPSYINLGAYIDVGTMIDTWATVGSCAQIGKYVHLSG
GVGIGGVLEPIQTNPTIIEDNCFIGSRSEIVEGVIVEKGAVISMGVFIGQSTKIYDRASGNIYYGRVPAGSVVIPGSLPS
KDGRVNTYCAVIVKTVDSKTKNKVKINNLLRDI

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family

Homologues:

Organism=Escherichia coli, GI1786362, Length=273, Percent_Identity=65.5677655677656, Blast_Score=371, Evalue=1e-104,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): DAPD_BLOPB (Q493D4)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277781.2
- ProteinModelPortal:   Q493D4
- STRING:   Q493D4
- GeneID:   3563214
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_277
- eggNOG:   COG2171
- HOGENOM:   HBG704071
- ProtClustDB:   PRK11830
- BioCyc:   CBLO291272:BPEN_277-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00811
- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004
- Gene3D:   G3DSA:1.10.166.10
- TIGRFAMs:   TIGR00965

Pfam domain/function: SSF51161 Trimer_LpxA_like

EC number: =2.3.1.117

Molecular weight: Translated: 30229; Mature: 30229

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: BINDING 104-104 BINDING 141-141

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQLRKIIESAFEKKEYISNNNIDSTVNNAVREIMDRLDNGTLRISEKINGTWITHQWLK
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHH
KAIMLAFHTMDNQLITWGGGVFFDKFPMKFSGWDHTRFENKKLRIIPPATVRYGAYIADN
HHHHHHHHHCCCEEEEECCCEEEECCCCEECCCCCCEECCCEEEEECCCCEEECEEEECC
TVIMPSYINLGAYIDVGTMIDTWATVGSCAQIGKYVHLSGGVGIGGVLEPIQTNPTIIED
EEEECCCCCCCEEEECCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEC
NCFIGSRSEIVEGVIVEKGAVISMGVFIGQSTKIYDRASGNIYYGRVPAGSVVIPGSLPS
CCCCCCHHHHHHHHEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCCCCC
KDGRVNTYCAVIVKTVDSKTKNKVKINNLLRDI
CCCCCCCEEEEEEEHHCCCCCCEEEHHHHHHCC
>Mature Secondary Structure
MNQLRKIIESAFEKKEYISNNNIDSTVNNAVREIMDRLDNGTLRISEKINGTWITHQWLK
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEHHHHH
KAIMLAFHTMDNQLITWGGGVFFDKFPMKFSGWDHTRFENKKLRIIPPATVRYGAYIADN
HHHHHHHHHCCCEEEEECCCEEEECCCCEECCCCCCEECCCEEEEECCCCEEECEEEECC
TVIMPSYINLGAYIDVGTMIDTWATVGSCAQIGKYVHLSGGVGIGGVLEPIQTNPTIIED
EEEECCCCCCCEEEECCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCEEEC
NCFIGSRSEIVEGVIVEKGAVISMGVFIGQSTKIYDRASGNIYYGRVPAGSVVIPGSLPS
CCCCCCHHHHHHHHEECCCCEEEEEEEECCCCEEEECCCCCEEEEECCCCCEEECCCCCC
KDGRVNTYCAVIVKTVDSKTKNKVKINNLLRDI
CCCCCCCEEEEEEEHHCCCCCCEEEHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA