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The map label for this gene is ydcR [H]

Identifier: 77761113

GI number: 77761113

Start: 935291

End: 936424

Strand: Reverse

Name: ydcR [H]

Synonym: XC_0778

Alternate gene names: 77761113

Gene position: 936424-935291 (Counterclockwise)

Preceding gene: 66767117

Following gene: 66767108

Centisome position: 18.19

GC content: 68.25

Gene sequence:

>1134_bases
TTGCAGGGCGTGTTCGACCTGCTCGCACGTACCGACCTGGTGCCGCTGCACCTGGCGACGCCTGCGCCCGCGCTACTACC
CGGCGCACACCTAGCCGCAGCGATGTCGCGCCAGCTACGCCGCCAGCGCACTGCGGCACTGGACTATGCACCTCCACAGG
GCCACGCCGCGCTGCGTCGGCAGATCGCGCTGCGGTATGCGCAATGCGGCACCAACGTGGACGCAGACGAAGTGGTGATC
ACCGCTGGCGCGATGGAGGCAATCAGCCTGACGTTACGCACCATCACCACGCCAGGCGATGTGGTGGTGGTGGAGGCGCC
CACCTACCACGGCATCCTGCAAGCGGTCGCCGCGCTGCGTCTGAAGGTGCTGGAAGTTCCCAACCGCGCAGGGCAAGGCA
TTGACGCCGCGCATCTGGATGCACTGCTGCAACGCACGCCGGCACGCGCCGCGATCCTGGTGCCCAACTTCAACAATCCG
CTGGGCAGCCTCACCCCCGATCACGCCAAGCGCGCCGTAGTGGACAGTTGCGCACGGCATGGCACGGTGGTGATCGAAGA
CGATATCTACGGCGAGCTGGCCTGGTCTGGTCAGCGCCCACGCCCGCTGCGGCAGTTCGACACGCACGCCAACGTCATCA
CCTGCGGCTCGTTTTCCAAGGTGTTGTCACCTGGCCTGCGCGTGGGCTGGCTGCTCGGTGGGCCGTGGACCGACGCGCTG
GTGCGCGCCAAGTATTTTTCCACCGTCGGCAACGCGAGCCTGCCGCAGCTGGCCCTGGCCGATTACCTGGCGCAACACGA
TCTGGAGCGGCATCTGCGCAAGCTGCGCCGCACGCTGGCCGACAACGGTCAACGCCTGCGCGATGCGATCGTGCGGCACT
GGCCATCCGGCACGCGCATCGGCGAGCCGGCAGGTGGATTGTCGCTGTGGCTGCAGTTGCCCGATGGCGGCAGCGGCCAG
ACGCTGTTCGAAGCCGCGCTGGCCAAGGGCATCGGCACCTCACCCGGCCAGGTGTATTCCAGCCGCGGCGACTACGCCGA
CCATCTGCGCCTGACCTGCGGCCAGCCGTGGAGCGAGACACTGGACCGCGCCATGCGGCAGCTGGGACGGCTGACCGCGC
AACGCCCGCGTTGA

Upstream 100 bases:

>100_bases
GCTATTTCGTGCGCGCCGCTGCCGCGCCACTGCCGGCCGCCACGCCCACGCCACGCCCACGCCACGCCGGCGTGCGCCGG
GCGTCATCGCCAACCCCGCA

Downstream 100 bases:

>100_bases
ATCGCGGGCGTACGCGTTGTTGCCAGAAATCCAGCAGGCACCTGCTCTGTTCGCAGGTACTGCGCGTCGATGGTTGGAAG
GTGATCAACGGCGTCCGCAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MQGVFDLLARTDLVPLHLATPAPALLPGAHLAAAMSRQLRRQRTAALDYAPPQGHAALRRQIALRYAQCGTNVDADEVVI
TAGAMEAISLTLRTITTPGDVVVVEAPTYHGILQAVAALRLKVLEVPNRAGQGIDAAHLDALLQRTPARAAILVPNFNNP
LGSLTPDHAKRAVVDSCARHGTVVIEDDIYGELAWSGQRPRPLRQFDTHANVITCGSFSKVLSPGLRVGWLLGGPWTDAL
VRAKYFSTVGNASLPQLALADYLAQHDLERHLRKLRRTLADNGQRLRDAIVRHWPSGTRIGEPAGGLSLWLQLPDGGSGQ
TLFEAALAKGIGTSPGQVYSSRGDYADHLRLTCGQPWSETLDRAMRQLGRLTAQRPR

Sequences:

>Translated_377_residues
MQGVFDLLARTDLVPLHLATPAPALLPGAHLAAAMSRQLRRQRTAALDYAPPQGHAALRRQIALRYAQCGTNVDADEVVI
TAGAMEAISLTLRTITTPGDVVVVEAPTYHGILQAVAALRLKVLEVPNRAGQGIDAAHLDALLQRTPARAAILVPNFNNP
LGSLTPDHAKRAVVDSCARHGTVVIEDDIYGELAWSGQRPRPLRQFDTHANVITCGSFSKVLSPGLRVGWLLGGPWTDAL
VRAKYFSTVGNASLPQLALADYLAQHDLERHLRKLRRTLADNGQRLRDAIVRHWPSGTRIGEPAGGLSLWLQLPDGGSGQ
TLFEAALAKGIGTSPGQVYSSRGDYADHLRLTCGQPWSETLDRAMRQLGRLTAQRPR
>Mature_377_residues
MQGVFDLLARTDLVPLHLATPAPALLPGAHLAAAMSRQLRRQRTAALDYAPPQGHAALRRQIALRYAQCGTNVDADEVVI
TAGAMEAISLTLRTITTPGDVVVVEAPTYHGILQAVAALRLKVLEVPNRAGQGIDAAHLDALLQRTPARAAILVPNFNNP
LGSLTPDHAKRAVVDSCARHGTVVIEDDIYGELAWSGQRPRPLRQFDTHANVITCGSFSKVLSPGLRVGWLLGGPWTDAL
VRAKYFSTVGNASLPQLALADYLAQHDLERHLRKLRRTLADNGQRLRDAIVRHWPSGTRIGEPAGGLSLWLQLPDGGSGQ
TLFEAALAKGIGTSPGQVYSSRGDYADHLRLTCGQPWSETLDRAMRQLGRLTAQRPR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=316, Percent_Identity=25.6329113924051, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI33469970, Length=316, Percent_Identity=25.6329113924051, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4507369, Length=187, Percent_Identity=28.3422459893048, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1787710, Length=378, Percent_Identity=38.8888888888889, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1790797, Length=373, Percent_Identity=36.1930294906166, Blast_Score=245, Evalue=3e-66,
Organism=Caenorhabditis elegans, GI17567663, Length=369, Percent_Identity=25.2032520325203, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21356535, Length=309, Percent_Identity=23.9482200647249, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI18859735, Length=229, Percent_Identity=27.5109170305677, Blast_Score=79, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 40737; Mature: 40737

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGVFDLLARTDLVPLHLATPAPALLPGAHLAAAMSRQLRRQRTAALDYAPPQGHAALRR
CCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
QIALRYAQCGTNVDADEVVITAGAMEAISLTLRTITTPGDVVVVEAPTYHGILQAVAALR
HHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHEECCCCCEEEEECCCHHHHHHHHHHHH
LKVLEVPNRAGQGIDAAHLDALLQRTPARAAILVPNFNNPLGSLTPDHAKRAVVDSCARH
HHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
GTVVIEDDIYGELAWSGQRPRPLRQFDTHANVITCGSFSKVLSPGLRVGWLLGGPWTDAL
CEEEEECCCCEEEECCCCCCCCHHHHCCCCCEEEECCHHHHHCCCCEEEEEECCCHHHHH
VRAKYFSTVGNASLPQLALADYLAQHDLERHLRKLRRTLADNGQRLRDAIVRHWPSGTRI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
GEPAGGLSLWLQLPDGGSGQTLFEAALAKGIGTSPGQVYSSRGDYADHLRLTCGQPWSET
CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHEEECCCCHHHH
LDRAMRQLGRLTAQRPR
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQGVFDLLARTDLVPLHLATPAPALLPGAHLAAAMSRQLRRQRTAALDYAPPQGHAALRR
CCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
QIALRYAQCGTNVDADEVVITAGAMEAISLTLRTITTPGDVVVVEAPTYHGILQAVAALR
HHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHEECCCCCEEEEECCCHHHHHHHHHHHH
LKVLEVPNRAGQGIDAAHLDALLQRTPARAAILVPNFNNPLGSLTPDHAKRAVVDSCARH
HHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
GTVVIEDDIYGELAWSGQRPRPLRQFDTHANVITCGSFSKVLSPGLRVGWLLGGPWTDAL
CEEEEECCCCEEEECCCCCCCCHHHHCCCCCEEEECCHHHHHCCCCEEEEEECCCHHHHH
VRAKYFSTVGNASLPQLALADYLAQHDLERHLRKLRRTLADNGQRLRDAIVRHWPSGTRI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC
GEPAGGLSLWLQLPDGGSGQTLFEAALAKGIGTSPGQVYSSRGDYADHLRLTCGQPWSET
CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHEEECCCCHHHH
LDRAMRQLGRLTAQRPR
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]