| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is foxA [H]
Identifier: 66766747
GI number: 66766747
Start: 468084
End: 470219
Strand: Reverse
Name: foxA [H]
Synonym: XC_0405
Alternate gene names: 66766747
Gene position: 470219-468084 (Counterclockwise)
Preceding gene: 66766748
Following gene: 66766745
Centisome position: 9.13
GC content: 60.86
Gene sequence:
>2136_bases ATGCATTCCTTTCCCTCGGTCCTCCGTCCGGGACGCCTAGCCTTGGCTCTCGTTCCATTCCTGCTGCATTCCACTGGAGT CTTGGCACAACAAGGCCCAGCGCCCCGAACGCTCGACACGGTCCGGGTCGTCGACGATCGCGCAGGCACATTGACTGACA TCAGTTCGACCGGTTCGGCACTCGGTCTGAGCGTGCTCGATACTCCTGCAAGCCTGACCGTTATCTTGCGTGAGCAACTG AACGCACGCGGCAATGCCAACCTAAACAATGCTATCACCTGGGCCGGTGCCATCAGCGCGATGCCTCATCCAGGCAATGG CCTGAGTGCCCTATCCAGCCGTGGTTTTACCGACAGTGCGTCGGTCATGCGTCTGTATGACGGCATCCGACAGTACGGCG GCGTGGGAGTCACGTTCCCTTTTGACACGTGGTCGATCGAACGCATCGAAGTGTTGCGTGGCCCGGCCTCCGTCATCTAT GGCGACGGCGCGATCGGGGGCGTAGTCAACATCGTGCCCAAGAAGCCTCACTTTGGCCCGGTGGAAAACGAGCTTCGAGC TACCGTGGGCAGCCAGGACACGGCACGACTGGGGGTCGGCAGCGGGGGCGCGTTGAGCTCCAACCTCGCCTACCGGCTGG ATGTCAGTGGCAATTACAGTAGCGGCTGGGTGGATCGTGGCTACAACGGTGATGCCACCTTCTCGGGCGCATTGCTCTGG CAAGCGCGGCCGGACCTGCAATTCACACTGACGCATGCAGAAGGCTATCAACGCCCCATGCGTTACTTCGGCACGCCATT GGTGGACGGCCAACAGCTGAATGCGTTGCGCCACGAAAACTACAACGTCTCTGACAGCGTCATCCGGTTCCGAGACCGTT GGAGCCAGCTCGACGCGGTGTGGACGCCCAACAATACGGTTGAATGGCGCACGCGCCTTTACCAGGTCGACAGCCAGCGC GATTGGCGCAATGCCGAGGCCTACGTCTATAACGCGACAACCGGGCTGATCGACCGCTCCGACAACACGCAGATCACGCA CAACCAGGACCAGACCGGTCTGACCTCCACGCTGCGGTTGCGGGGTGGTCTTGGCCACATGGACAACACCTTTGCCGTTG GCGTAGATGCCAACCGAGCCCACTTCAAGCACACCAATAACACCTACTCGGGAAGTTCCGGGCCGGTGGACCTGTTCAAT CCGGTGCCGGGCCGGTTCATTAGCGACGCGCCGAATATCCCCCGGTATCGCAACAGCGCCGAGCAATACTCGCTCTTCCT TGAAGACCGTTTGGCGCTGACCGACCGCTGGTCCATCTTGGCAGGCCTCCGCCATGACCGTGCCATTGTTCAGCGCACCG ACCTGATCAGCGGGCAGCGGACGTTCTCAAAGACTTACTCAAATACCGGCTGGCGTACCGGAACGGTGTTTGCACTCCGG CCAACGTCCACGCTTTACGCCCAGTTCTCTCAAGCGTCTGACCCGATCAGTGGTCTGCTAATGATCAGTCCGAACAACGG GGCATTTGATCTATCCAGAGGCAAGCAGGTGGAAGTTGGCTTCAAACAGGGCTTTGATGGCGGCGAGTGGACCTTGGCTG CCTATCGCATTCGCAAGACCGGTTTGCTTAGCCGCGACCCCTTGAACCCGGACCGACGTGTCCAGGTGGGCGCACAAACG TCCAAGGGGGTGGAGGCGTCCTTGGCATGGGTCTTCGCGCCGGCATGGTCGCTGGATCTCAACGCCACCGTGCTGAAGGC AGAGTTCGAAGATTTTCTGGAGACCACTGGTTCGCCGGTCATCGCGGTCTCTCGGGATGGCAACGTGCCGCCCAACGTCG CCGAGCGCTTGGCCAATGCGTGGGTGAGCTGGCAGGTGGCTACAGACTGGACGGTCGCCACGGGTGTTCGGTATGTCGGA AAGCGCTATGCGGACACTGCCAATACGTTGCAACTTCCGGGCTATGCCACCACGGATGTCACGGTCTCCTGGCAGGCCCG CCCAGCCACCCGACTGACCGCCCGCGTCTTCAATGCCTTCGACAAGACGTTCTACGAAACGGCTTATTACACCGATACCC AGTGGCTGCGGGGTGCCGACAGGCGCGTCGAGTTCACCGTGGACCATCGTTTCTGA
Upstream 100 bases:
>100_bases GCAGCACCGCGCATCGTCCACGTGGCCCTCCGATGGCGGCGTAGTCGTTCTCAAACAACGCCCGCTTGCGCCCACGGCGC TATTCCACCTGGAACCACCC
Downstream 100 bases:
>100_bases TGGCCAGTCACATCTCGACCTTCCCGCTCATTGTTGGAGTTTCCATGCATCCCTCCAGGGCCACACCGTCCGCTCCCTCC CGCCTGGCGTTCGCGCTTGC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 711; Mature: 711
Protein sequence:
>711_residues MHSFPSVLRPGRLALALVPFLLHSTGVLAQQGPAPRTLDTVRVVDDRAGTLTDISSTGSALGLSVLDTPASLTVILREQL NARGNANLNNAITWAGAISAMPHPGNGLSALSSRGFTDSASVMRLYDGIRQYGGVGVTFPFDTWSIERIEVLRGPASVIY GDGAIGGVVNIVPKKPHFGPVENELRATVGSQDTARLGVGSGGALSSNLAYRLDVSGNYSSGWVDRGYNGDATFSGALLW QARPDLQFTLTHAEGYQRPMRYFGTPLVDGQQLNALRHENYNVSDSVIRFRDRWSQLDAVWTPNNTVEWRTRLYQVDSQR DWRNAEAYVYNATTGLIDRSDNTQITHNQDQTGLTSTLRLRGGLGHMDNTFAVGVDANRAHFKHTNNTYSGSSGPVDLFN PVPGRFISDAPNIPRYRNSAEQYSLFLEDRLALTDRWSILAGLRHDRAIVQRTDLISGQRTFSKTYSNTGWRTGTVFALR PTSTLYAQFSQASDPISGLLMISPNNGAFDLSRGKQVEVGFKQGFDGGEWTLAAYRIRKTGLLSRDPLNPDRRVQVGAQT SKGVEASLAWVFAPAWSLDLNATVLKAEFEDFLETTGSPVIAVSRDGNVPPNVAERLANAWVSWQVATDWTVATGVRYVG KRYADTANTLQLPGYATTDVTVSWQARPATRLTARVFNAFDKTFYETAYYTDTQWLRGADRRVEFTVDHRF
Sequences:
>Translated_711_residues MHSFPSVLRPGRLALALVPFLLHSTGVLAQQGPAPRTLDTVRVVDDRAGTLTDISSTGSALGLSVLDTPASLTVILREQL NARGNANLNNAITWAGAISAMPHPGNGLSALSSRGFTDSASVMRLYDGIRQYGGVGVTFPFDTWSIERIEVLRGPASVIY GDGAIGGVVNIVPKKPHFGPVENELRATVGSQDTARLGVGSGGALSSNLAYRLDVSGNYSSGWVDRGYNGDATFSGALLW QARPDLQFTLTHAEGYQRPMRYFGTPLVDGQQLNALRHENYNVSDSVIRFRDRWSQLDAVWTPNNTVEWRTRLYQVDSQR DWRNAEAYVYNATTGLIDRSDNTQITHNQDQTGLTSTLRLRGGLGHMDNTFAVGVDANRAHFKHTNNTYSGSSGPVDLFN PVPGRFISDAPNIPRYRNSAEQYSLFLEDRLALTDRWSILAGLRHDRAIVQRTDLISGQRTFSKTYSNTGWRTGTVFALR PTSTLYAQFSQASDPISGLLMISPNNGAFDLSRGKQVEVGFKQGFDGGEWTLAAYRIRKTGLLSRDPLNPDRRVQVGAQT SKGVEASLAWVFAPAWSLDLNATVLKAEFEDFLETTGSPVIAVSRDGNVPPNVAERLANAWVSWQVATDWTVATGVRYVG KRYADTANTLQLPGYATTDVTVSWQARPATRLTARVFNAFDKTFYETAYYTDTQWLRGADRRVEFTVDHRF >Mature_711_residues MHSFPSVLRPGRLALALVPFLLHSTGVLAQQGPAPRTLDTVRVVDDRAGTLTDISSTGSALGLSVLDTPASLTVILREQL NARGNANLNNAITWAGAISAMPHPGNGLSALSSRGFTDSASVMRLYDGIRQYGGVGVTFPFDTWSIERIEVLRGPASVIY GDGAIGGVVNIVPKKPHFGPVENELRATVGSQDTARLGVGSGGALSSNLAYRLDVSGNYSSGWVDRGYNGDATFSGALLW QARPDLQFTLTHAEGYQRPMRYFGTPLVDGQQLNALRHENYNVSDSVIRFRDRWSQLDAVWTPNNTVEWRTRLYQVDSQR DWRNAEAYVYNATTGLIDRSDNTQITHNQDQTGLTSTLRLRGGLGHMDNTFAVGVDANRAHFKHTNNTYSGSSGPVDLFN PVPGRFISDAPNIPRYRNSAEQYSLFLEDRLALTDRWSILAGLRHDRAIVQRTDLISGQRTFSKTYSNTGWRTGTVFALR PTSTLYAQFSQASDPISGLLMISPNNGAFDLSRGKQVEVGFKQGFDGGEWTLAAYRIRKTGLLSRDPLNPDRRVQVGAQT SKGVEASLAWVFAPAWSLDLNATVLKAEFEDFLETTGSPVIAVSRDGNVPPNVAERLANAWVSWQVATDWTVATGVRYVG KRYADTANTLQLPGYATTDVTVSWQARPATRLTARVFNAFDKTFYETAYYTDTQWLRGADRRVEFTVDHRF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=701, Percent_Identity=22.6818830242511, Blast_Score=119, Evalue=1e-27, Organism=Escherichia coli, GI1788478, Length=730, Percent_Identity=24.2465753424658, Blast_Score=87, Evalue=4e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 78197; Mature: 78197
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSFPSVLRPGRLALALVPFLLHSTGVLAQQGPAPRTLDTVRVVDDRAGTLTDISSTGSA CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCE LGLSVLDTPASLTVILREQLNARGNANLNNAITWAGAISAMPHPGNGLSALSSRGFTDSA EEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHCCCCCCCCCHHHHHCCCCCCHH SVMRLYDGIRQYGGVGVTFPFDTWSIERIEVLRGPASVIYGDGAIGGVVNIVPKKPHFGP HHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCEEEECCCCCCCEEEEECCCCCCCC VENELRATVGSQDTARLGVGSGGALSSNLAYRLDVSGNYSSGWVDRGYNGDATFSGALLW CCHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECEEEEE QARPDLQFTLTHAEGYQRPMRYFGTPLVDGQQLNALRHENYNVSDSVIRFRDRWSQLDAV EECCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCEE WTPNNTVEWRTRLYQVDSQRDWRNAEAYVYNATTGLIDRSDNTQITHNQDQTGLTSTLRL ECCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCEEECCCCCCCCCEEEEE RGGLGHMDNTFAVGVDANRAHFKHTNNTYSGSSGPVDLFNPVPGRFISDAPNIPRYRNSA CCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCH EQYSLFLEDRLALTDRWSILAGLRHDRAIVQRTDLISGQRTFSKTYSNTGWRTGTVFALR HHHEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEC PTSTLYAQFSQASDPISGLLMISPNNGAFDLSRGKQVEVGFKQGFDGGEWTLAAYRIRKT CCHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCEEEEHHHCCCCCCCEEEEEEEEHHC GLLSRDPLNPDRRVQVGAQTSKGVEASLAWVFAPAWSLDLNATVLKAEFEDFLETTGSPV CCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCEECCCCEEEEHHHHHHHHHCCCCCE IAVSRDGNVPPNVAERLANAWVSWQVATDWTVATGVRYVGKRYADTANTLQLPGYATTDV EEEECCCCCCHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEECCCEEECEE TVSWQARPATRLTARVFNAFDKTFYETAYYTDTQWLRGADRRVEFTVDHRF EEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHCCCCCEEEEEECCCC >Mature Secondary Structure MHSFPSVLRPGRLALALVPFLLHSTGVLAQQGPAPRTLDTVRVVDDRAGTLTDISSTGSA CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCEEECCCCCCE LGLSVLDTPASLTVILREQLNARGNANLNNAITWAGAISAMPHPGNGLSALSSRGFTDSA EEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHCCCCCCCCCHHHHHCCCCCCHH SVMRLYDGIRQYGGVGVTFPFDTWSIERIEVLRGPASVIYGDGAIGGVVNIVPKKPHFGP HHHHHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCEEEECCCCCCCEEEEECCCCCCCC VENELRATVGSQDTARLGVGSGGALSSNLAYRLDVSGNYSSGWVDRGYNGDATFSGALLW CCHHHHHHCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEECEEEEE QARPDLQFTLTHAEGYQRPMRYFGTPLVDGQQLNALRHENYNVSDSVIRFRDRWSQLDAV EECCCEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCEE WTPNNTVEWRTRLYQVDSQRDWRNAEAYVYNATTGLIDRSDNTQITHNQDQTGLTSTLRL ECCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCEEECCCCCEEECCCCCCCCCEEEEE RGGLGHMDNTFAVGVDANRAHFKHTNNTYSGSSGPVDLFNPVPGRFISDAPNIPRYRNSA CCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCH EQYSLFLEDRLALTDRWSILAGLRHDRAIVQRTDLISGQRTFSKTYSNTGWRTGTVFALR HHHEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEEC PTSTLYAQFSQASDPISGLLMISPNNGAFDLSRGKQVEVGFKQGFDGGEWTLAAYRIRKT CCHHHHHHHHCCCCCCCEEEEECCCCCEEECCCCCEEEEHHHCCCCCCCEEEEEEEEHHC GLLSRDPLNPDRRVQVGAQTSKGVEASLAWVFAPAWSLDLNATVLKAEFEDFLETTGSPV CCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCEECCCCEEEEHHHHHHHHHCCCCCE IAVSRDGNVPPNVAERLANAWVSWQVATDWTVATGVRYVGKRYADTANTLQLPGYATTDV EEEECCCCCCHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEECCCEEECEE TVSWQARPATRLTARVFNAFDKTFYETAYYTDTQWLRGADRRVEFTVDHRF EEEECCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1640832 [H]