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The map label for this gene is ydiP [C]

Identifier: 66766710

GI number: 66766710

Start: 427221

End: 428117

Strand: Reverse

Name: ydiP [C]

Synonym: XC_0367

Alternate gene names: 66766710

Gene position: 428117-427221 (Counterclockwise)

Preceding gene: 66766713

Following gene: 66766703

Centisome position: 8.32

GC content: 67.22

Gene sequence:

>897_bases
ATGCCCACACGCGCGCGTAATGTATCTGCGGCTGTAGCGGTTCCGGCGTTCGGCCTGTATGGCGAACACGGCGTGGCGGT
GCCGGATCTGCTGCACTGGGAATCGATCGGTGCGCGCAGCCGGCTGCATGATTGGCGGATTGCGCCACACCGGCACGACG
AGCTGGCGCAGTTGCTCTATGTGCAACGTGGCCCGGCCACCGTGCATCTGGATGGCCGCACACAGCGCATCGGCGGTGCC
ACGGTGATCTGGTTGCCACCGATGTGCGTGCATGGCTTCAACTTCGATCCGCGGGTGCGCGGGCATATCGCCACGCTGTG
CATGCCGCTGGTGCACGCCACCGTGCAGGGTGCGCCTGCGTTGCGTCAGGCGTTAGCGTCTCCGCAGCTACTTGCGGCTG
GGCGCAGCCGCCAATTGCTCGATCTTGTCTTTGCCAGCCTTGCCGACGACCACGCGCGGCAACGCATCGGCCGCGAGGCG
GCGATGCAGGCAGCGGCCGCGCAACTGCTGGTCTGGTGCGCGCGCACGGCGCTGGAAAAAGCCCACGACCACGCAATCAC
TGCTGCGCATGCGGACCCAGGCCTGCGGCATCTGCGCAGCTTCCAGGCCTTGATCGATGTGCACTACCGCGCGCATTGGT
CCATTGCCCGCTATGCCGCGCAGGTGGGGCTCACCCCCGGGCACCTCAACGCGGTGTGCCAGCGCCTGGCCAACGCCTCG
GCGCTGCAGTTGCTGCAACGCCGGCTCATGCTGGAAGCCGGGCGCAGCCTGCGCTACACCAGCATGAGCGTGCAGCAGGT
GGCTGCCGACCTTGGATTTTTCGACGCTGCGTACTTCAGCCGGTTTTTCGCCCGGCACGCCGGCTGCTCCCCATCGCACT
TCCGTGCGGCGGGGTAA

Upstream 100 bases:

>100_bases
TGCGCATACGGAGTTCCTACAGCGACGATGCGTTGCAGTGTCGGTAGCCATGCCGCCCGATTGAAGGGATGATTGCCGGC
AGTGCTTGGACTTTTCGACG

Downstream 100 bases:

>100_bases
GCCACCGGCCGGGCATCAGCCGCACACTCAGAACGGGTACTGCGGCACCGCGTGCTTGATCGTCAGCCATTGCCAGTGCA
TGTACTGCTCCCAATCGGCC

Product: PobR regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MPTRARNVSAAVAVPAFGLYGEHGVAVPDLLHWESIGARSRLHDWRIAPHRHDELAQLLYVQRGPATVHLDGRTQRIGGA
TVIWLPPMCVHGFNFDPRVRGHIATLCMPLVHATVQGAPALRQALASPQLLAAGRSRQLLDLVFASLADDHARQRIGREA
AMQAAAAQLLVWCARTALEKAHDHAITAAHADPGLRHLRSFQALIDVHYRAHWSIARYAAQVGLTPGHLNAVCQRLANAS
ALQLLQRRLMLEAGRSLRYTSMSVQQVAADLGFFDAAYFSRFFARHAGCSPSHFRAAG

Sequences:

>Translated_298_residues
MPTRARNVSAAVAVPAFGLYGEHGVAVPDLLHWESIGARSRLHDWRIAPHRHDELAQLLYVQRGPATVHLDGRTQRIGGA
TVIWLPPMCVHGFNFDPRVRGHIATLCMPLVHATVQGAPALRQALASPQLLAAGRSRQLLDLVFASLADDHARQRIGREA
AMQAAAAQLLVWCARTALEKAHDHAITAAHADPGLRHLRSFQALIDVHYRAHWSIARYAAQVGLTPGHLNAVCQRLANAS
ALQLLQRRLMLEAGRSLRYTSMSVQQVAADLGFFDAAYFSRFFARHAGCSPSHFRAAG
>Mature_297_residues
PTRARNVSAAVAVPAFGLYGEHGVAVPDLLHWESIGARSRLHDWRIAPHRHDELAQLLYVQRGPATVHLDGRTQRIGGAT
VIWLPPMCVHGFNFDPRVRGHIATLCMPLVHATVQGAPALRQALASPQLLAAGRSRQLLDLVFASLADDHARQRIGREAA
MQAAAAQLLVWCARTALEKAHDHAITAAHADPGLRHLRSFQALIDVHYRAHWSIARYAAQVGLTPGHLNAVCQRLANASA
LQLLQRRLMLEAGRSLRYTSMSVQQVAADLGFFDAAYFSRFFARHAGCSPSHFRAAG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32623; Mature: 32492

Theoretical pI: Translated: 10.79; Mature: 10.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRARNVSAAVAVPAFGLYGEHGVAVPDLLHWESIGARSRLHDWRIAPHRHDELAQLLY
CCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHH
VQRGPATVHLDGRTQRIGGATVIWLPPMCVHGFNFDPRVRGHIATLCMPLVHATVQGAPA
HCCCCEEEEECCCEEECCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
LRQALASPQLLAAGRSRQLLDLVFASLADDHARQRIGREAAMQAAAAQLLVWCARTALEK
HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHDHAITAAHADPGLRHLRSFQALIDVHYRAHWSIARYAAQVGLTPGHLNAVCQRLANAS
HHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH
ALQLLQRRLMLEAGRSLRYTSMSVQQVAADLGFFDAAYFSRFFARHAGCSPSHFRAAG
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PTRARNVSAAVAVPAFGLYGEHGVAVPDLLHWESIGARSRLHDWRIAPHRHDELAQLLY
CCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHH
VQRGPATVHLDGRTQRIGGATVIWLPPMCVHGFNFDPRVRGHIATLCMPLVHATVQGAPA
HCCCCEEEEECCCEEECCCEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
LRQALASPQLLAAGRSRQLLDLVFASLADDHARQRIGREAAMQAAAAQLLVWCARTALEK
HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHDHAITAAHADPGLRHLRSFQALIDVHYRAHWSIARYAAQVGLTPGHLNAVCQRLANAS
HHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH
ALQLLQRRLMLEAGRSLRYTSMSVQQVAADLGFFDAAYFSRFFARHAGCSPSHFRAAG
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA