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The map label for this gene is csgD [C]

Identifier: 66766422

GI number: 66766422

Start: 86107

End: 86304

Strand: Reverse

Name: csgD [C]

Synonym: XC_0072

Alternate gene names: 66766422

Gene position: 86304-86107 (Counterclockwise)

Preceding gene: 77761064

Following gene: 66766421

Centisome position: 1.68

GC content: 65.15

Gene sequence:

>198_bases
GTGCTGGGCCTGCTCGCCGAAGGCCTGGCCGACAAGGAGATCGCGCAGCAACTGGGTGTGTCGCCCAACACGGTGCGCAA
CCATGTGGCCGCGCTGTATTCCAAGATCGACGTGCATAGCCGCGGCGAAGCCATTGTCTGGGCGCGTGAGCGTGGTTTTG
CCGGCCGCCCGGCAAAGAAACCTGCACGCAAGCCGTGA

Upstream 100 bases:

>100_bases
GCGGTGTCGCCGGCTTCGCATGCCTTCTGCTCGGCGGTGCGCTTGAGCGCGTCAGGCGCACGGCTGCGGCGTGGCCGACC
TCACGGGCCGCGAGCGCGAT

Downstream 100 bases:

>100_bases
GCGCGGGGTAGATGACGCGAATGCACCAGCCCAGCTAGTGCATTCGCATGTGTGCATCGCAGCAACAGACGCACACCATG
CTCACACCGGCCCAGACAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family Protein; Transcriptional Regulator LuxR Family; Transcriptional Regulator; Chemotaxis Methyltransferase Protein; Sensor Protein; Sensory Box Transcriptional Regulator; Sensory Box Protein; Sensory Box; LuxR Family Regulatory Protein; FOG PAS/PAC Domain Protein

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MLGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWARERGFAGRPAKKPARKP

Sequences:

>Translated_65_residues
MLGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWARERGFAGRPAKKPARKP
>Mature_65_residues
MLGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWARERGFAGRPAKKPARKP

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7047; Mature: 7047

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWARERGFAGRPAKK
CCCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
PARKP
CCCCC
>Mature Secondary Structure
MLGLLAEGLADKEIAQQLGVSPNTVRNHVAALYSKIDVHSRGEAIVWARERGFAGRPAKK
CCCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
PARKP
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA