| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yprA [H]
Identifier: 66766404
GI number: 66766404
Start: 68775
End: 71183
Strand: Reverse
Name: yprA [H]
Synonym: XC_0054
Alternate gene names: 66766404
Gene position: 71183-68775 (Counterclockwise)
Preceding gene: 66766405
Following gene: 77761061
Centisome position: 1.38
GC content: 67.41
Gene sequence:
>2409_bases TTGCTCACCGAGCGCCTGGAGCGGCGCTACCACGACCGCATCACCGGCAGCTTCACCATCCCCGGGCGCGAAGGCCATTA CGCGCCCATTCCCGACGACGTGCCGGCGGCCCTGGCCGATGCGCTGCGCGCGCGCGGCATCAGCCAGCTCTACAGCCACC AGGCCGATGCCTGGGCGGCGAGCCAGCGCGGCGAGCATGTGGCGATTGTGACGCCCACCGCCTCAGGCAAGTCGCTGTGC TACACGCTGCCGGTGGTAAGCGCGGCGATGACCGCCGGCGCCAAGGCGCTGTACCTGTTCCCGACCAAGGCGCTGGCGCA GGACCAGGTGGCCGAGTTGCTGGAGCTCAACCGCGCCGGCGAGCTGGGCGTGAAAGCCTTCACCTTCGATGGCGATACGC CCGGCGATGCGCGCCAGGCGATCCGCCTGCATGGCGACATCGTGGTGAGCAACCCGGACATGCTGCACCAGGCGATCCTG CCGCATCACACCAAGTGGGCGCAGTTCTTCGAGAACCTGCGCTATGTGGTGATCGATGAGATCCACACCTACCGCGGTGT GTTCGGCAGCCACGTCACCAACGTGCTGCGCCGGCTCAAGCGCATCTGCGCGTTCTATGGCGCCAACCCGCAGTTCATCC TGTGCTCGGCCACCATCGGCAACCCGCATGCGCACGCGCAGGCCTTGATCGAAGAACGCGTGCATGCCATCACCGAATCC GGCGCGCCTACCGGTGACAAGCACGTGCTGCTGTGGAACCCGCCGGTGGTCAATGCCGACCTGGGCCTGCGCGCATCGGC ACGCTCGCAGAGCAACCGTATCGCGCGCATCGCGATCAAGAGCGGGCTGAAGACGCTGGTGTTCGCGCAGACGCGGCTGA TGGTGGAAGTGCTGACCAAGTATCTCAAGGACATCTTCGACCACGACCCGCGCAAGCCCGCGCGCATCCGGGCATACCGC GGTGGCTATCTGCCCACCGAGCGCCGCGAAGTGGAGCGTGCGATGCGCGCGGGCACCATCGACGGCATCGTGTCCACGTC TGCGCTGGAACTGGGCGTGGATATCGGCGCGCTGGACGTGGTGATCCTCAATGGCTACCCCGGCAGCGTGGCGGCCACCT GGCAGCGGTTTGGCCGCGCCGGGCGGCGCCAACAACCGGCACTGGGTGTGCTGGTGGCCAGCTCGCAGCCGCTGGACCAG TACGTGGTGCGGCACCCGGATTTTTTCGCCGATGCCTCGCCCGAACATGCACGCATTGCGCCGGATCAGCCGCTGATTTT GTTCGACCACATCCGCTGCGCGGCGTTCGAGCTGCCGTTCATTGCCAGCGAGCCGTTCGGGCCGATCGACCCGCTGGTGT TCCTGGAAGCCTTGGCCGAGAGCGAAGTGATCCACCAGGAAGGCGACCGCTGGGAGTGGATCGCCGACAGCTACCCGGCC AATGCGGTGAGCCTGCGCTCGGTGGCCGACGGCAACTTCGTGGTGGTGGACAAGAGCGACGGCAAGCAGCAGATCATCGC CGAGGTGGATTATTCGGCCGCGGCACTGACCTTGTACGAAGGCGCCATCCACATGGTGCAGAGCACGCCGTACCAGGTGG AGCGGCTGGACTGGGAAGGCCGCAAGGCCTATGTCACGCGCACGCATGTGGACTACTACACCGACAGCATCGACTACACC AAGCTGAAGGTGCTGGACCGCTTCGACGGCGGCGTGGCCGGGCGCGGCGACTCGCATCACGGCGAGGTGCATGTGGTGCG GCGCGTGTCCGGCTACAAGAAGATCCGCTACTACACGCACGAGAACATCGGCTACGGGCCGGTCAATCTGCCCGACCAGG AACTGCACACCACCGCGGTGTGGTGGCAGCTGCCGCAGGCCACGCTGGGCAAGGCGTTCGCGTCCAAGCAGGATGCGCTG GATGGTTTCCTGGGTGCGGCCTATGCGCTGCACGTGGTGGCCACGGTGGCGGTGATGGCCGATGCGCGCGACCTGCAAAA AGCCGTGGGCAATGGCGACGGCGCGTGGTTTGCGGTGGCCGACCAGACCGGGCGCGGGCAGCTGCGCGGCGTGGACGAGG GCGAAGAAGGCGCGGTGGAATTGCAGCAGGCCTTCGTGCCCACGGTGTATCTGTACGACAACTTCCCCGGCGGCGTGGGC CTGAGCGAGCCGCTGTGGCTGCGCCAGGCCGAGCTGCTGCAGCGCGCCGACGAGCTGGTGCGGCGTTGCGACTGCAGCGC CGGCTGCCCGGCCTGCGTGGGCCCGGTGCTGGCCGCGCATGAGGAAGGCAAGGGCGAGTCGCCCAAGTCGCTGGCCTTGA CGGTGCTGGCGCTGTTGTTCGATGCGGACGCGCCGTTGCGGCATGCCACCCAGGTGGACGATGACCTGGCGCTGGATGTG CTTGCATGA
Upstream 100 bases:
>100_bases TGGGAGCCGCCGTATGCCTCCGTTTGCCCTCGCTCCCCGCACCGAAACCGCCGAACGCGCCCTGGCCACCACTGATGGCC GGCCCAGCCGCGACGGCGCA
Downstream 100 bases:
>100_bases GCGTGAGTGCGGACCGGTTGCGCTTGTTGCGGCGTCAGGCCGGGCATGCCGATGTGCCTGCGCCGGCGGCGCTTGCAGAT GGCGCTGCAGTGGATGGTGC
Product: ATP-dependent RNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MLTERLERRYHDRITGSFTIPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAASQRGEHVAIVTPTASGKSLC YTLPVVSAAMTAGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAIL PHHTKWAQFFENLRYVVIDEIHTYRGVFGSHVTNVLRRLKRICAFYGANPQFILCSATIGNPHAHAQALIEERVHAITES GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYR GGYLPTERREVERAMRAGTIDGIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQ YVVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELPFIASEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYT KLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDAL DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVG LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEEGKGESPKSLALTVLALLFDADAPLRHATQVDDDLALDV LA
Sequences:
>Translated_802_residues MLTERLERRYHDRITGSFTIPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAASQRGEHVAIVTPTASGKSLC YTLPVVSAAMTAGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAIL PHHTKWAQFFENLRYVVIDEIHTYRGVFGSHVTNVLRRLKRICAFYGANPQFILCSATIGNPHAHAQALIEERVHAITES GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYR GGYLPTERREVERAMRAGTIDGIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQ YVVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELPFIASEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYT KLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDAL DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVG LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEEGKGESPKSLALTVLALLFDADAPLRHATQVDDDLALDV LA >Mature_802_residues MLTERLERRYHDRITGSFTIPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAASQRGEHVAIVTPTASGKSLC YTLPVVSAAMTAGAKALYLFPTKALAQDQVAELLELNRAGELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAIL PHHTKWAQFFENLRYVVIDEIHTYRGVFGSHVTNVLRRLKRICAFYGANPQFILCSATIGNPHAHAQALIEERVHAITES GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTKYLKDIFDHDPRKPARIRAYR GGYLPTERREVERAMRAGTIDGIVSTSALELGVDIGALDVVILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQ YVVRHPDFFADASPEHARIAPDQPLILFDHIRCAAFELPFIASEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEGRKAYVTRTHVDYYTDSIDYT KLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTHENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDAL DGFLGAAYALHVVATVAVMADARDLQKAVGNGDGAWFAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVG LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEEGKGESPKSLALTVLALLFDADAPLRHATQVDDDLALDV LA
Specific function: Unknown
COG id: COG1205
COG function: function code R; Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787942, Length=413, Percent_Identity=26.3922518159806, Blast_Score=99, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6320497, Length=775, Percent_Identity=32.5161290322581, Blast_Score=372, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR018973 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF09369 DUF1998; PF00271 Helicase_C [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 87819; Mature: 87819
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTERLERRYHDRITGSFTIPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAA CCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHH SQRGEHVAIVTPTASGKSLCYTLPVVSAAMTAGAKALYLFPTKALAQDQVAELLELNRAG HCCCCEEEEEECCCCCCCEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC ELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLRYVVIDE CCCEEEEEECCCCCCHHHHHHEEECCEEECCHHHHHHHHCCCCHHHHHHHHCCCEEEEEH IHTYRGVFGSHVTNVLRRLKRICAFYGANPQFILCSATIGNPHAHAQALIEERVHAITES HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTK CCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHH YLKDIFDHDPRKPARIRAYRGGYLPTERREVERAMRAGTIDGIVSTSALELGVDIGALDV HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEE VILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFADASPEHARIA EEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCC PDQPLILFDHIRCAAFELPFIASEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA CCCCEEEEECCEEHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEG CCEEEEEECCCCEEEEECCCCCHHHHEECCCCHHEEHHHHHHHHHHHCCCCEEEECCCCC RKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTH CEEEEEEEEEEEECCCCCCHHEEEEHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC ENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDALDGFLGAAYALHVVATVAVMA CCCCCCCCCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DARDLQKAVGNGDGAWFAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVG HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEEGKGESPKSLALTVLALLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH DADAPLRHATQVDDDLALDVLA CCCCCHHHHHCCCCCCHHEECC >Mature Secondary Structure MLTERLERRYHDRITGSFTIPGREGHYAPIPDDVPAALADALRARGISQLYSHQADAWAA CCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCHHHHH SQRGEHVAIVTPTASGKSLCYTLPVVSAAMTAGAKALYLFPTKALAQDQVAELLELNRAG HCCCCEEEEEECCCCCCCEEEEHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCC ELGVKAFTFDGDTPGDARQAIRLHGDIVVSNPDMLHQAILPHHTKWAQFFENLRYVVIDE CCCEEEEEECCCCCCHHHHHHEEECCEEECCHHHHHHHHCCCCHHHHHHHHCCCEEEEEH IHTYRGVFGSHVTNVLRRLKRICAFYGANPQFILCSATIGNPHAHAQALIEERVHAITES HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC GAPTGDKHVLLWNPPVVNADLGLRASARSQSNRIARIAIKSGLKTLVFAQTRLMVEVLTK CCCCCCCEEEEECCCEECCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHH YLKDIFDHDPRKPARIRAYRGGYLPTERREVERAMRAGTIDGIVSTSALELGVDIGALDV HHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEE VILNGYPGSVAATWQRFGRAGRRQQPALGVLVASSQPLDQYVVRHPDFFADASPEHARIA EEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCC PDQPLILFDHIRCAAFELPFIASEPFGPIDPLVFLEALAESEVIHQEGDRWEWIADSYPA CCCCEEEEECCEEHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC NAVSLRSVADGNFVVVDKSDGKQQIIAEVDYSAAALTLYEGAIHMVQSTPYQVERLDWEG CCEEEEEECCCCEEEEECCCCCHHHHEECCCCHHEEHHHHHHHHHHHCCCCEEEECCCCC RKAYVTRTHVDYYTDSIDYTKLKVLDRFDGGVAGRGDSHHGEVHVVRRVSGYKKIRYYTH CEEEEEEEEEEEECCCCCCHHEEEEHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEC ENIGYGPVNLPDQELHTTAVWWQLPQATLGKAFASKQDALDGFLGAAYALHVVATVAVMA CCCCCCCCCCCCHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DARDLQKAVGNGDGAWFAVADQTGRGQLRGVDEGEEGAVELQQAFVPTVYLYDNFPGGVG HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC LSEPLWLRQAELLQRADELVRRCDCSAGCPACVGPVLAAHEEGKGESPKSLALTVLALLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH DADAPLRHATQVDDDLALDVLA CCCCCHHHHHCCCCCCHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on acid anhydrides [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]