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The map label for this gene is yprB [H]

Identifier: 77761061

GI number: 77761061

Start: 67288

End: 68778

Strand: Reverse

Name: yprB [H]

Synonym: XC_0053

Alternate gene names: 77761061

Gene position: 68778-67288 (Counterclockwise)

Preceding gene: 66766404

Following gene: 77761060

Centisome position: 1.34

GC content: 70.76

Gene sequence:

>1491_bases
ATGAGCGTGAGTGCGGACCGGTTGCGCTTGTTGCGGCGTCAGGCCGGGCATGCCGATGTGCCTGCGCCGGCGGCGCTTGC
AGATGGCGCTGCAGTGGATGGTGCGGATGTTTCCGCTGCGGTCGATGCGCAGGCGGATGCACACCCGCTGCGCGCGGCAG
CGGTGGCGCGCACCTCGGGTGATGCAGTCGGTGCGGATGCAGTGGCAGGCGATGCGCACACGCGTGCCGCAGGTGACATG
CCTGCGGCGGTGCAGCCAACGCGTGCGCCGGCAGCGCCGGTGCCTGGCAGCGATCCTGGGGTGAGCGCAGAACGTTTGCG
CCTGCTACGCCGCCAGGTCGGCGGGCTGACACCCACGGCGCGCAAGGACGATGCGGTGATGCCCACGCGTGCGCAACGCC
AGCCTGCGCCGGGTGCTGCTGCGTCTGCGTCACGCGCTTTGCCGCGCGATGCGGCGGTGCGAAGCGCGCAGCCCGGCAGC
GCAGAGGCTGCCGGTGCACCGCGTGCCCAGCCCAGCGCACCGGCCATGACGCGCCGCGCCCTGCAGGCACCGGTTGCTGC
AGCGGCTGCGCGCGATAGCTCGGCGTTTGCCTGGGTGGACCACGATGTGCGCCACAAGCCGGCAGGTGCGGCGGCCGATG
CGGCGGCGCGCGTGCCGGCTGCGCCCATATCCAACCCGCCACCGCAGCGACGTACCGATATCGCCGGCCTGCGCAAGATG
ATCGGCCTGCGCGAGCGCGCGGTCTCGACGCACGCGCCGGTACGCGCGGCGTCCACCGACCGGCATCTGCCCGGCAACGA
GATCGCGCCCGGCCTGCACCTGATCGAAGCCTTCCTGCCGCAGGCGATCCCACGCCAGGCGCTGTCGCTGGCGTTCGCCA
AGCGCGAGGACGCGGTGGACCCGATGGATCTATTGTTCTTCGACACCGAAACCACCGGCCTGGCCGGCGGCACCGGCACG
CGCGCCTTCATGATCGGCGTGGCCGATTGGTACACCGACGTTACGCAGGGTAGCGGGCTGCGCGTGCGCCAGTTGATGAT
GTCCACGATGGCGGCCGAAAGCGCGATGCTGGATCTGTTCCGCAGCTGGCTGTCGCCGCAGACGGTGCTGTCCAGCTACA
ACGGCCGCTGCTACGACGCGCCGTTGTTGAAGACGCGCTACCGGCTGGCGCGGCGCGGCGACCCGATCTCTGCGCTGGAT
CATGTGGACCTGCTGTTCCCCACCCGGCGCCGTTATCGCGGCACCTGGGAGAACTGCAAGCTGGCCACCATCGAACGGCA
GCTGCTGCGCGTGGTGCGCGAAGACGACCTGCCCGGCTCCGAAGCCCCGGCCGCCTGGTTGAGTTACCTGCGCGGCGGCA
GCGCGCGCAACCTGCGCCGCGTGGCCGAGCACAATCACCAGGACGTGGTGACCTTGTCGCTGCTGATGCAGCGCCTGGTG
GCGGTGGACGCGCAGGACCGTGAAGTGATTCCGATGCTGGAGACGCCGTAG

Upstream 100 bases:

>100_bases
AGTCGCTGGCCTTGACGGTGCTGGCGCTGTTGTTCGATGCGGACGCGCCGTTGCGGCATGCCACCCAGGTGGACGATGAC
CTGGCGCTGGATGTGCTTGC

Downstream 100 bases:

>100_bases
CGCAGGAGCGGCGGACCACGCGCAGTGGTGGCGCAATGCGGGCATCCTGGGTGCGCGCGCCAGTGCAGTTTGCCGGCAGA
GGCGATGTCCACCGGCAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MSVSADRLRLLRRQAGHADVPAPAALADGAAVDGADVSAAVDAQADAHPLRAAAVARTSGDAVGADAVAGDAHTRAAGDM
PAAVQPTRAPAAPVPGSDPGVSAERLRLLRRQVGGLTPTARKDDAVMPTRAQRQPAPGAAASASRALPRDAAVRSAQPGS
AEAAGAPRAQPSAPAMTRRALQAPVAAAAARDSSAFAWVDHDVRHKPAGAAADAAARVPAAPISNPPPQRRTDIAGLRKM
IGLRERAVSTHAPVRAASTDRHLPGNEIAPGLHLIEAFLPQAIPRQALSLAFAKREDAVDPMDLLFFDTETTGLAGGTGT
RAFMIGVADWYTDVTQGSGLRVRQLMMSTMAAESAMLDLFRSWLSPQTVLSSYNGRCYDAPLLKTRYRLARRGDPISALD
HVDLLFPTRRRYRGTWENCKLATIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLV
AVDAQDREVIPMLETP

Sequences:

>Translated_496_residues
MSVSADRLRLLRRQAGHADVPAPAALADGAAVDGADVSAAVDAQADAHPLRAAAVARTSGDAVGADAVAGDAHTRAAGDM
PAAVQPTRAPAAPVPGSDPGVSAERLRLLRRQVGGLTPTARKDDAVMPTRAQRQPAPGAAASASRALPRDAAVRSAQPGS
AEAAGAPRAQPSAPAMTRRALQAPVAAAAARDSSAFAWVDHDVRHKPAGAAADAAARVPAAPISNPPPQRRTDIAGLRKM
IGLRERAVSTHAPVRAASTDRHLPGNEIAPGLHLIEAFLPQAIPRQALSLAFAKREDAVDPMDLLFFDTETTGLAGGTGT
RAFMIGVADWYTDVTQGSGLRVRQLMMSTMAAESAMLDLFRSWLSPQTVLSSYNGRCYDAPLLKTRYRLARRGDPISALD
HVDLLFPTRRRYRGTWENCKLATIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLV
AVDAQDREVIPMLETP
>Mature_495_residues
SVSADRLRLLRRQAGHADVPAPAALADGAAVDGADVSAAVDAQADAHPLRAAAVARTSGDAVGADAVAGDAHTRAAGDMP
AAVQPTRAPAAPVPGSDPGVSAERLRLLRRQVGGLTPTARKDDAVMPTRAQRQPAPGAAASASRALPRDAAVRSAQPGSA
EAAGAPRAQPSAPAMTRRALQAPVAAAAARDSSAFAWVDHDVRHKPAGAAADAAARVPAAPISNPPPQRRTDIAGLRKMI
GLRERAVSTHAPVRAASTDRHLPGNEIAPGLHLIEAFLPQAIPRQALSLAFAKREDAVDPMDLLFFDTETTGLAGGTGTR
AFMIGVADWYTDVTQGSGLRVRQLMMSTMAAESAMLDLFRSWLSPQTVLSSYNGRCYDAPLLKTRYRLARRGDPISALDH
VDLLFPTRRRYRGTWENCKLATIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLVA
VDAQDREVIPMLETP

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52539; Mature: 52408

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVSADRLRLLRRQAGHADVPAPAALADGAAVDGADVSAAVDAQADAHPLRAAAVARTSG
CCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCC
DAVGADAVAGDAHTRAAGDMPAAVQPTRAPAAPVPGSDPGVSAERLRLLRRQVGGLTPTA
CCCCCCHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
RKDDAVMPTRAQRQPAPGAAASASRALPRDAAVRSAQPGSAEAAGAPRAQPSAPAMTRRA
CCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
LQAPVAAAAARDSSAFAWVDHDVRHKPAGAAADAAARVPAAPISNPPPQRRTDIAGLRKM
HHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IGLRERAVSTHAPVRAASTDRHLPGNEIAPGLHLIEAFLPQAIPRQALSLAFAKREDAVD
HHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PMDLLFFDTETTGLAGGTGTRAFMIGVADWYTDVTQGSGLRVRQLMMSTMAAESAMLDLF
CCCEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RSWLSPQTVLSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTRRRYRGTWENCK
HHHCCHHHHHHCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCC
LATIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
AVDAQDREVIPMLETP
HCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SVSADRLRLLRRQAGHADVPAPAALADGAAVDGADVSAAVDAQADAHPLRAAAVARTSG
CCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHCCC
DAVGADAVAGDAHTRAAGDMPAAVQPTRAPAAPVPGSDPGVSAERLRLLRRQVGGLTPTA
CCCCCCHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
RKDDAVMPTRAQRQPAPGAAASASRALPRDAAVRSAQPGSAEAAGAPRAQPSAPAMTRRA
CCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
LQAPVAAAAARDSSAFAWVDHDVRHKPAGAAADAAARVPAAPISNPPPQRRTDIAGLRKM
HHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
IGLRERAVSTHAPVRAASTDRHLPGNEIAPGLHLIEAFLPQAIPRQALSLAFAKREDAVD
HHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PMDLLFFDTETTGLAGGTGTRAFMIGVADWYTDVTQGSGLRVRQLMMSTMAAESAMLDLF
CCCEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RSWLSPQTVLSSYNGRCYDAPLLKTRYRLARRGDPISALDHVDLLFPTRRRYRGTWENCK
HHHCCHHHHHHCCCCCEECCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCCC
LATIERQLLRVVREDDLPGSEAPAAWLSYLRGGSARNLRRVAEHNHQDVVTLSLLMQRLV
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
AVDAQDREVIPMLETP
HCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]