Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
---|---|
Accession | NC_007005 |
Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is alsR [H]
Identifier: 66045949
GI number: 66045949
Start: 3295137
End: 3296036
Strand: Reverse
Name: alsR [H]
Synonym: Psyr_2713
Alternate gene names: 66045949
Gene position: 3296036-3295137 (Counterclockwise)
Preceding gene: 66045950
Following gene: 66045948
Centisome position: 54.09
GC content: 60.0
Gene sequence:
>900_bases ATGTTCGAGCTTTCCCAACTGCGTTGCTTCACCACGGTGGCCACAGAGCTGAATTTTCGCCGTGCCGCCGAACGGCTAAA CATGACGCAGCCGCCGTTGAGCCGGCAGATTCAGATACTGGAGCACAATCTGGGCGTCGAGCTGTTCACGCGCAGCACCC GCAGTGTGGCCCTGACTGCCGCGGGCAGGGCTTTTTTCATCGAAGCCCAGACCTTGCTGGAGCGCGCGCAGCAGGCGGCC ATTTCTGCGCGGCGCTTTGCCGAAGGTGACATTGGTTCGGTGACCATCAGTTTTGTCGGCAGCGCGGTGTATGAGTTTCT GCCCAGGGTGATCGCCGAGGCGCGCCTCAAGCAGCCGCAGGTGAAGATTTCCCTGACCGAAATGAATACCTATCAGCAGC ACGAAGCACTCAGGGCGCGGCGTATTGACCTGGGCATCGTGCGGGCGCCGTTGTTTCAGCCGGGTTACGAGAGCGAATGC CTGGTACGCGAGCCGTTCGTGCTGGCCGTGCCGAGCAATCATCGCCTGGCGCATGCCGATTCGGTGGCGGTGGCCGATCT GGATGGCGCACCGTTCCTGATGTATTCGCATTCGGCGTATCCACCGTTCAACGAACTGCTGACCGGTATGTTTCGCTCCG CACGAGTTGCACCGGAGTATGTCCAATGGCTTGGATCGTCACTGACTATTCTGGCGTTGGTCAACGCCGGAATGGGCCTG GCTTTGGTGCCGCGTTGTGCAACCAATGTGGTGTTCAAGGATGTCGTGTTTCGTGACATTGACCTGGGCGAAGGCGTGCA GAGCGAGTTGCACCTGGTCTGGCGTACCGACAATGACAATCCGGCGTGCCGGATGCTGCTGCAAGCCATTCGGGCGGCCG TCAGGGCAGATGAAAATTGA
Upstream 100 bases:
>100_bases ATGGGCGTCTTTCCCTTTGCTTTGTCAAACGGCGCACTGGGTTGCTCGAGCAGTTACTGTACTCTGTGTCAGTGACTTGA TTGATACCGGGAGTGGATCA
Downstream 100 bases:
>100_bases AGCGAAAAACCTTGCAACGTAGTGGCATCAACTATCATTCATTCAGTCGATAGTCATCATCAAGCAAGGCAAGTTCTGTT TTTCCGGCAAAGGAGGAGGA
Product: regulatory protein, LysR:LysR, substrate-binding
Products: NA
Alternate protein names: Als operon regulatory protein [H]
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MFELSQLRCFTTVATELNFRRAAERLNMTQPPLSRQIQILEHNLGVELFTRSTRSVALTAAGRAFFIEAQTLLERAQQAA ISARRFAEGDIGSVTISFVGSAVYEFLPRVIAEARLKQPQVKISLTEMNTYQQHEALRARRIDLGIVRAPLFQPGYESEC LVREPFVLAVPSNHRLAHADSVAVADLDGAPFLMYSHSAYPPFNELLTGMFRSARVAPEYVQWLGSSLTILALVNAGMGL ALVPRCATNVVFKDVVFRDIDLGEGVQSELHLVWRTDNDNPACRMLLQAIRAAVRADEN
Sequences:
>Translated_299_residues MFELSQLRCFTTVATELNFRRAAERLNMTQPPLSRQIQILEHNLGVELFTRSTRSVALTAAGRAFFIEAQTLLERAQQAA ISARRFAEGDIGSVTISFVGSAVYEFLPRVIAEARLKQPQVKISLTEMNTYQQHEALRARRIDLGIVRAPLFQPGYESEC LVREPFVLAVPSNHRLAHADSVAVADLDGAPFLMYSHSAYPPFNELLTGMFRSARVAPEYVQWLGSSLTILALVNAGMGL ALVPRCATNVVFKDVVFRDIDLGEGVQSELHLVWRTDNDNPACRMLLQAIRAAVRADEN >Mature_299_residues MFELSQLRCFTTVATELNFRRAAERLNMTQPPLSRQIQILEHNLGVELFTRSTRSVALTAAGRAFFIEAQTLLERAQQAA ISARRFAEGDIGSVTISFVGSAVYEFLPRVIAEARLKQPQVKISLTEMNTYQQHEALRARRIDLGIVRAPLFQPGYESEC LVREPFVLAVPSNHRLAHADSVAVADLDGAPFLMYSHSAYPPFNELLTGMFRSARVAPEYVQWLGSSLTILALVNAGMGL ALVPRCATNVVFKDVVFRDIDLGEGVQSELHLVWRTDNDNPACRMLLQAIRAAVRADEN
Specific function: Regulates the expression of the alsSD operon for acetoin biosynthesis [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788887, Length=287, Percent_Identity=38.3275261324042, Blast_Score=178, Evalue=4e-46, Organism=Escherichia coli, GI1787879, Length=297, Percent_Identity=35.016835016835, Blast_Score=166, Evalue=2e-42, Organism=Escherichia coli, GI2367136, Length=292, Percent_Identity=31.1643835616438, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI145693105, Length=248, Percent_Identity=31.8548387096774, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1788748, Length=248, Percent_Identity=28.6290322580645, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790399, Length=246, Percent_Identity=28.4552845528455, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI157672245, Length=187, Percent_Identity=31.5508021390374, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1787601, Length=223, Percent_Identity=30.9417040358744, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=24.6913580246914, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1790208, Length=287, Percent_Identity=27.1777003484321, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI87081904, Length=295, Percent_Identity=24.406779661017, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1789204, Length=259, Percent_Identity=25.8687258687259, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787806, Length=247, Percent_Identity=23.0769230769231, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788481, Length=251, Percent_Identity=25.8964143426295, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787530, Length=257, Percent_Identity=25.6809338521401, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789173, Length=170, Percent_Identity=31.1764705882353, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786713, Length=298, Percent_Identity=26.8456375838926, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789639, Length=244, Percent_Identity=26.2295081967213, Blast_Score=62, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 33288; Mature: 33288
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFELSQLRCFTTVATELNFRRAAERLNMTQPPLSRQIQILEHNLGVELFTRSTRSVALTA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEE AGRAFFIEAQTLLERAQQAAISARRFAEGDIGSVTISFVGSAVYEFLPRVIAEARLKQPQ CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCC VKISLTEMNTYQQHEALRARRIDLGIVRAPLFQPGYESECLVREPFVLAVPSNHRLAHAD EEEEEECCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEECCEEEEECCCCCEECCC SVAVADLDGAPFLMYSHSAYPPFNELLTGMFRSARVAPEYVQWLGSSLTILALVNAGMGL CEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHCCCCE ALVPRCATNVVFKDVVFRDIDLGEGVQSELHLVWRTDNDNPACRMLLQAIRAAVRADEN EEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFELSQLRCFTTVATELNFRRAAERLNMTQPPLSRQIQILEHNLGVELFTRSTRSVALTA CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECCCCEEEEEE AGRAFFIEAQTLLERAQQAAISARRFAEGDIGSVTISFVGSAVYEFLPRVIAEARLKQPQ CCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCC VKISLTEMNTYQQHEALRARRIDLGIVRAPLFQPGYESECLVREPFVLAVPSNHRLAHAD EEEEEECCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEECCEEEEECCCCCEECCC SVAVADLDGAPFLMYSHSAYPPFNELLTGMFRSARVAPEYVQWLGSSLTILALVNAGMGL CEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHCCCCE ALVPRCATNVVFKDVVFRDIDLGEGVQSELHLVWRTDNDNPACRMLLQAIRAAVRADEN EEHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7685336; 9353933; 9384377 [H]